NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38590.1 Public Mus musculus 3 Rbm15 23 108 98 CCDS HistoryNCBI Gene:229700Re-query CCDS DB by CCDS ID:38590.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061772.10 ENSMUSP00000054424.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061772.10Link to Ensembl Protein Viewer:ENSMUSP00000054424.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000061772Re-query CCDS DB by Protein ID:ENSMUSP00000054424
Original member NCBI NM_001045807.1 NP_001039272.1 Updated not alive Link to Nucleotide Sequence:NM_001045807.1Link to Protein Sequence:NP_001039272.1Re-query CCDS DB by Nucleotide ID:NM_001045807Re-query CCDS DB by Protein ID:NP_001039272
Current member NCBI NM_001045807.2 NP_001039272.1 Accepted alive Link to Nucleotide Sequence:NM_001045807.2Link to Protein Sequence:NP_001039272.1Re-query CCDS DB by Nucleotide ID:NM_001045807Re-query CCDS DB by Protein ID:NP_001039272Link to BLAST:NP_001039272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001039272.1 962 Q0VBL3-1 962 100% 0 0

Chromosomal Locations for CCDS 38590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107326282 107326304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107330215 107333080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2889 nt):
ATGAGGTCTGCGGGGCGGGAGCCTTTGCCGCGGCGGAGTCCAAGATGGCGGCGTGCGAGTCCGCTGTGTG
AAACGAGCGCGGGGTGGCGGGTTAGTCAGCTCCGCAGAGACGACCTCCGGCGACCCTCAACAATGAAAGG
AAAGGAGCGCTCGCCGGTCAAGCCCAAGCGCTCCCGTGGCGGTGAGGACTCCAGTTCTCGTGGGGAGCGG
AGCAAGAAGTTAGGGGGCTCCGGCGGCAGCAATGGGAGCAGCAGCGGGAAGACGGACAGCGGCGGGTCGC
GGCGGAGCCTTCATCTGGACAAGTCCAGCAGCCGGGGCGGCAGCCGCGAGTACGAGACCGGCGGGGGCAG
CTCCAGTAGCCGCTTGCACAGTTACAGCTCCCCGAGCACCAAAAATTCCTCAGGCGGGGGCGAGTCGCGC
AGCAGCTCCCGGGGTGGAGGCGGGGAGTCACGTTCCTCCGGGGCCGCCTCCTCCGCGCCCGGCGGCGGGG
ACGGCGTGGAGTACAAGACCCTGAAGATCAGCGAGCTGGGGTCCCAGCTGAGCGACGAGGCGGTGGAGGA
CGGGCTGTTTCACGAGTTCAAACGCTTCGGTGATGTAAGTGTCAAAATCAGTCACCTCTCAGGTTCTGGC
AGCGGGGATGAGCGGGTAGCCTTTGTGAACTTCCGGAGGCCAGAGGACGCGAGGGCGGCCAAGCATGCCA
GAGGCCGCCTGGTGCTCTATGACCGGCCTCTGAAGATAGAAGCCGTGTACGTGAGCCGGCGCCGCAGCCG
CTCCCCGTTAGACAAAGATGCTTACGCCCCGTCATCCAGCGTGGTCGGGACCTCAGTCGGTAGCCACCGG
CACGCCCCTGGAGGAGGGGGAGGTCAGAGGTCGCTTTCCCCTGGAGGTGCTGCTCTGGGATACAGAGACT
ACCGGTTGCAGCAGTTGGCCCTGGGCCGCCTGCCTCCTCCACCCCCGCCACCATTGCCCCGAGAGCTGGA
AAGAGAACGAGACTATCCGTTCTATGACCGGGTGCGCCCGGCCTACAGCCTGGAGCCGAGGGTGGGAGCT
GGAGCAGGTGCGGCTCCTTTCCGAGAAGTGGATGAGATATCACCTGAGGACGATCAGCGTGCCAACCGGA
CACTTTTCTTGGGCAACTTAGATATCACTGTGACGGAAAATGATCTCAGAAGGGCTTTTGATCGTTTTGG
AGTCATCACAGAAGTGGACATTAAGAGGCCTTCTCGAGGCCAGACCAGTACCTATGGCTTTCTCAAATTT
GAGAATCTAGACATGTCTCACAGGGCCAAACTTGCAATGTCTGGCAAAATTATAATTCGGAATCCAATCA
AGATTGGTTATGGTAAAGCCACACCCACTACCCGACTTTGGGTGGGTGGTCTGGGACCCTGGGTGCCTCT
TGCTGCCCTGGCACGAGAATTTGACCGATTTGGCACCATTCGAACCATAGACTACCGTAAAGGTGACAGT
TGGGCATATATACAGTATGAAAGTTTGGATGCAGCTCATGCTGCCTGGACCCATATGCGTGGATTCCCAC
TTGGTGGCCCAGATCGTCGCCTCAGGGTAGACTTTGCAGACACAGAACATCGTTACCAGCAGCAATATCT
TCAGCCTCTGCCCTTGACCCACTATGAACTAGTGACGGATACTTTTGGACATAGAGCACCTGACCCTTTG
AGGAGTGCTCGGGACAGGACACCACCCTTACTATACAGAGATCGTGATAGGGACCTTTATACTGATTCTG
ACTGGGTGCCACCCCCACCACCGGTTCGAGAACGCAGTGCTCGGGCTGCAACTAGTGCTGTCACTGCTTA
TGAGCCACTAGATAGCTTGGATCGAAGGAGGGATGGCTGGTCACTGGACAGGGACAGAGGTGATCGGGAC
TTGCCCAGCAGCAGGGACCAGCCAAGGAAGCGAAGGCTGCCTGAGGAAAGTGGAGGACGGCATCTTGATA
GATCACCTGAGAGTGAACGGCCTCGAAAACAGCGTCACTGCACTCCTTCTCCTGACCGAAGTCCAGAACT
GAGCAGTAACAGAGATCGCTACAACAGTGACAATGATCGATCATCTCGTCTTCTCCTCTTGGAAAGGTCT
TCCCCAGTCAGAGATAGACGGGGCAGTTTGGAGAAGAGCCAGAGCGACAAGCGAGACCGTAAAAACTCTG
CATCAGCTGAACGGGATAGGAAGCATCGGACAGCTGCTCCCACAGAGGGAAAAAACCCTCTGAAAAAGGA
AGACCGATCTGATGGCAATGCACCCAGTGCCAGCACTTCTTCATCAAAGCAGAAGCCACCTTCCCAGAAA
CAGGATGGAGGGACAGCTCCTGTGGCAGCATCCTCTCCCAAACTCTGTTTGGCTTGGCAGGGCATGCTTC
TACTGAAGAACAGCAACTTCCCTTCCAACATGCATCTGTTGCAGGGTGACCTCCAAGTTGCTAGCAGTCT
ACTTGTGGAGGGCTCAACTGGAGGCAAAGTGGCCCAACTCAAGATCACTCAGCGGCTCCGTTTGGACCAA
CCCAAGTTGGATGAAGTAACTCGACGCATCAAAGTGGCAGGGCCTAATGGTTATGCCATTCTCCTGGCTG
TACCTGGAAGTTCTGACAGCCGATCTTCCTCTTCCTCAGCCACATCAGACACTGCCGCCTCTACTCAGAG
GCCACTTAGGAACCTTGTGTCCTATTTAAAGCAAAAGCAGGCAGCTGGGGTGATCAGCCTCCCTGTGGGA
GGCAATAAAGACAAGGAAAACACCGGGGTTCTTCATGCCTTCCCACCTTGTGAGTTCTCTCAGCAGTTCC
TGGATTCCCCTGCCAAGGCACTGGCCAAATCTGAAGAAGATTACCTGGTCATGATCATTGTCCGTGCAAA
ACTGGTGAACAGCGGATGA

Translation (962 aa):
MRSAGREPLPRRSPRWRRASPLCETSAGWRVSQLRRDDLRRPSTMKGKERSPVKPKRSRGGEDSSSRGER
SKKLGGSGGSNGSSSGKTDSGGSRRSLHLDKSSSRGGSREYETGGGSSSSRLHSYSSPSTKNSSGGGESR
SSSRGGGGESRSSGAASSAPGGGDGVEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSG
SGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDAYAPSSSVVGTSVGSHR
HAPGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYDRVRPAYSLEPRVGA
GAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTENDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKF
ENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDS
WAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDTFGHRAPDPL
RSARDRTPPLLYRDRDRDLYTDSDWVPPPPPVRERSARAATSAVTAYEPLDSLDRRRDGWSLDRDRGDRD
LPSSRDQPRKRRLPEESGGRHLDRSPESERPRKQRHCTPSPDRSPELSSNRDRYNSDNDRSSRLLLLERS
SPVRDRRGSLEKSQSDKRDRKNSASAERDRKHRTAAPTEGKNPLKKEDRSDGNAPSASTSSSKQKPPSQK
QDGGTAPVAASSPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQ
PKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSATSDTAASTQRPLRNLVSYLKQKQAAGVISLPVG
GNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVNSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH