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Report for CCDS17752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17752.1 Public Mus musculus 3 Gpr61 23 108 98 CCDS HistoryNCBI Gene:229714Re-query CCDS DB by CCDS ID:17752.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 17752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062028.7 ENSMUSP00000055557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062028.7Link to Ensembl Protein Viewer:ENSMUSP00000055557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000062028Re-query CCDS DB by Protein ID:ENSMUSP00000055557
Original member Current member EBI ENSMUST00000116284.1 ENSMUSP00000111988.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116284.1Link to Ensembl Protein Viewer:ENSMUSP00000111988.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116284Re-query CCDS DB by Protein ID:ENSMUSP00000111988
Original member NCBI NM_001305461.1 NP_001292390.1 Updated not alive Link to Nucleotide Sequence:NM_001305461.1Link to Protein Sequence:NP_001292390.1Re-query CCDS DB by Nucleotide ID:NM_001305461Re-query CCDS DB by Protein ID:NP_001292390
Current member NCBI NM_001305461.2 NP_001292390.1 Accepted alive Link to Nucleotide Sequence:NM_001305461.2Link to Protein Sequence:NP_001292390.1Re-query CCDS DB by Nucleotide ID:NM_001305461Re-query CCDS DB by Protein ID:NP_001292390Link to BLAST:NP_001292390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292390.1 449 Q8C010 449 100% 0 0

Chromosomal Locations for CCDS 17752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108149994 108151343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGAGTCCTCACCCATCCCCCAGTCATCAGGAAACTCGTCCACTTTGGGAAGGGCCCTTCAAACCCCAG
GTCCCTCTACTGCCAGCGGGGTCCCAGAGTTGGGATTACGGGACGTGGCTTCAGAATCTGTGGCCCTCTT
CTTCATGCTCCTGTTGGATCTCACTGCTGTGGCTGGCAATGCTGCTGTGATGGCTGTTATTGCCAAGACA
CCCGCCCTCCGAAAATTTGTTTTTGTCTTCCATCTTTGTCTGGTGGACCTGCTGGCTGCCCTGACCCTCA
TGCCGCTTGCCATGCTCTCCAGCTCTGCCCTCTTTGACCACGCCCTCTTTGGGGAGGTGGCCTGCCGCCT
CTACCTGTTCCTGAGCGTTTGCTTTGTCAGCCTGGCCATCCTTTCGGTGTCTGCCATTAATGTGGAGCGC
TACTATTATGTGGTCCACCCAATGCGCTACGAGGTGCGCATGACACTAGGGCTGGTGGCCTCCGTGCTGG
TGGGCGTGTGGGTAAAGGCCCTAGCCATGGCTTCTGTGCCAGTGTTGGGAAGGGTCTACTGGGAGGAAGG
AGCTCCCAGTGTTAACCCCGGCTGTTCTCTCCAATGGAGCCATAGTGCCTACTGCCAGCTTTTTGTGGTG
GTCTTTGCTGTTCTGTACTTCTTGCTGCCCTTGATCCTGATCTTTGTGGTCTACTGCAGCATGTTTCGAG
TGGCTCGCGTGGCTGCCATGCAACACGGGCCGCTGCCCACGTGGATGGAGACGCCCCGGCAACGCTCTGA
GTCTCTCAGTAGCCGCTCTACTATGGTTACCAGCTCCGGGGCTCACCAGACCACCCCACACCGGACGTTT
GGGGGTGGGAAGGCAGCAGTGGTCCTCCTGGCTGTAGGGGGACAGTTCTTGCTTTGTTGGTTGCCCTACT
TCTCTTTCCATCTCTATGTTGCCCTGAGCGCACAGCCCATTTCAGCAGGACAGGTGGAGAACGTGGTAAC
CTGGATTGGCTACTTTTGCTTCACTTCCAACCCCTTTTTCTACGGATGTCTCAACCGTCAGATCCGGGGC
GAGCTTAGCAAACAGTTTGTCTGCTTCTTCAAGGCAGCTCCAGAGGAGGAGCTGAGGCTGCCTAGTCGTG
AGGGCTCCATTGAGGAGAATTTCCTGCAGTTCCTCCAGGGGACCTCTGAGAACTGGGTTTCTCGGCCCCT
ACCCAGTCCTAAGCGGGAGCCACCCCCTGTTGTTGACTTTCGAATCCCAGGCCAGATTGCTGAGGAGACC
TCAGAGTTCCTGGAGCAGCAACTCACCAGCGACATCATCATGTCCGACAGCTACCTCCGTCCCGCCCCCT
CACCAAGGCTGGAGTCATGA

Translation (449 aa):
MESSPIPQSSGNSSTLGRALQTPGPSTASGVPELGLRDVASESVALFFMLLLDLTAVAGNAAVMAVIAKT
PALRKFVFVFHLCLVDLLAALTLMPLAMLSSSALFDHALFGEVACRLYLFLSVCFVSLAILSVSAINVER
YYYVVHPMRYEVRMTLGLVASVLVGVWVKALAMASVPVLGRVYWEEGAPSVNPGCSLQWSHSAYCQLFVV
VFAVLYFLLPLILIFVVYCSMFRVARVAAMQHGPLPTWMETPRQRSESLSSRSTMVTSSGAHQTTPHRTF
GGGKAAVVLLAVGGQFLLCWLPYFSFHLYVALSAQPISAGQVENVVTWIGYFCFTSNPFFYGCLNRQIRG
ELSKQFVCFFKAAPEEELRLPSREGSIEENFLQFLQGTSENWVSRPLPSPKREPPPVVDFRIPGQIAEET
SEFLEQQLTSDIIMSDSYLRPAPSPRLES


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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