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Report for CCDS34975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34975.1 Public Homo sapiens 9 FOXD4 24 110 108 CCDS HistoryNCBI Gene:2298Re-query CCDS DB by CCDS ID:34975.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382500.4 ENSP00000371940.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382500.4Link to Ensembl Protein Viewer:ENSP00000371940.2Re-query CCDS DB by Nucleotide ID:ENST00000382500Re-query CCDS DB by Protein ID:ENSP00000371940
Original member Current member NCBI NM_207305.5 NP_997188.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207305.5Link to Protein Sequence:NP_997188.2Re-query CCDS DB by Nucleotide ID:NM_207305Re-query CCDS DB by Protein ID:NP_997188Link to BLAST:NP_997188.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997188.2 439 Q12950 439 100% 0 0

Chromosomal Locations for CCDS 34975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 116800 118119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGAACTTGCCAAGAGCTGAGCGCCTTCGCTCCACACCGCAGCGCAGCCTCCGGGACTCCGATGGGGAAG
ACGGTAAAATCGATGTCCTGGGAGAGGAGGAAGATGAAGACGAGGAGGAGGCGGCGAGCCAGCAGTTCCT
AGAGCAGTCGCTCCAGCCGGGGCTGCAGGTGGCCCGGTGGGGCGGGGTTGCGCTTCCCCGAGAGCACATC
GAGGGCGGCGGCGGCCCGAGCGACCCCTCAGAGTTTGGCACCGAGTTCAGGGCACCGCCAAGGTCTGCGG
CGGCCTCTGAAGATGCCCGGCAGCCGGCAAAGCCCCCCTCCTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAAAGCCCGCACAAGCGCCTCACGCTCAGCGGCATCTGCGCCTTCATTAGTGACCGCTTCCCCTAC
TACCGCCGCAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTGAACGACTGCTTCGTCA
AGATCCCCCGCGAGCCGGGCCGCCCAGGCAAGGGCAACTACTGGAGCCTGGACCCCGCCTCCCAGGACAT
GTTCGACAATGGCAGCTTTCTCCGGCGTAGGAAGCGTTTCCAGCGCCACCAACCGACCCCGGGAGCCCAC
CTGCCCCACCCCTTCCCTCTACCTGCTGCACACGCCGCCCTGCACAACCCCCGCCCAGGCCCTCTGCTTG
GGGCCCCTGCCCCGCCGCAGCCAGTCCCGGGGGCCTACCCCAACACCGGCCCCGGGAGACGCCCTTACGC
TCTGCTGCACCCGCATCCTCCTCGCTACCTACTGCTCTCGGCCCCCGCCTATGCCGGGGCACCGAAGAAA
GCAGAAGGCGCGGACCTGGCGACCCCGGCACCCTTCCCGTGCTGCAGCCCTCACTTGGTCCTCAGCCTTG
GGAGGAGGGCAAGGGTCTGGCGTCGCCACCGGGAGGCGGATGCATCTCTTTCAGCATTGAGAGTATCATG
CAAGGGGTCAGGGGAGCGGGTACAGGGGCTGCGCAGAGTTTGTCCCCGACCGCGTGGAGCTACTGCCCCC
TGCTCCAGCGACCGTCAAGCCTGTCGGACAATTTTGCAGCAACAGCAGCGGCATCAGGAGGAGGACTGCG
CCAACGGCTGCGCTCCCACCAAGGGCGCGGTGCTGGGCGGGCACCTGTCGGCCGCGTCGGCGCTGCTGCG
GTATCAGGCGGTGGCAGAGGGCTCTGGGCTGACATCGCTGGCCGCCCCTTTGGGCGGAGAGGGGACCTCA
CCAGTTTTTTTAGTATCGCCCACGCCCAGTTCCCTGGCCGAGTCCGCAGGGCCCTCCTAG

Translation (439 aa):
MNLPRAERLRSTPQRSLRDSDGEDGKIDVLGEEEDEDEEEAASQQFLEQSLQPGLQVARWGGVALPREHI
EGGGGPSDPSEFGTEFRAPPRSAAASEDARQPAKPPSSYIALITMAILQSPHKRLTLSGICAFISDRFPY
YRRKFPAWQNSIRHNLSLNDCFVKIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPGAH
LPHPFPLPAAHAALHNPRPGPLLGAPAPPQPVPGAYPNTGPGRRPYALLHPHPPRYLLLSAPAYAGAPKK
AEGADLATPAPFPCCSPHLVLSLGRRARVWRRHREADASLSALRVSCKGSGERVQGLRRVCPRPRGATAP
CSSDRQACRTILQQQQRHQEEDCANGCAPTKGAVLGGHLSAASALLRYQAVAEGSGLTSLAAPLGGEGTS
PVFLVSPTPSSLAESAGPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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