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Report for CCDS51086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51086.1 Public Mus musculus 3 Clca3b 23 108 98 CCDS HistoryNCBI Gene:229927Re-query CCDS DB by CCDS ID:51086.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159989.1 ENSMUSP00000124581.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159989.1Link to Ensembl Protein Viewer:ENSMUSP00000124581.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159989Re-query CCDS DB by Protein ID:ENSMUSP00000124581
Original member Current member NCBI NM_139148.2 NP_631887.2 Accepted alive Link to Nucleotide Sequence:NM_139148.2Link to Protein Sequence:NP_631887.2Re-query CCDS DB by Nucleotide ID:NM_139148Re-query CCDS DB by Protein ID:NP_631887Link to BLAST:NP_631887.2

Chromosomal Locations for CCDS 51086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144822777 144823534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144825211 144825447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144825902 144826069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144827298 144827568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144827912 144828136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144836564 144836664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144837692 144837869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144839028 144839261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144841412 144841639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144844448 144844625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144846362 144846470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144846826 144846973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144847163 144847303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144849127 144849285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3135 nt):
ATGGTGCCAGGGCTGCAGGTCCTTCTGTTCCTCACCCTGCATCTCCTGCAGAACACAGAGAGCTCCATGG
TGCATCTCAACAGCAATGGATATGAGGGTGTGGTCATTGCCATTAACCCCAGTGTGCCGGAGGACGAAAG
GCTCATCCCAAGCATAAAGGAAATGGTAACTCAAGCCTCCACTTACCTGTTTGAAGCCACAGAAAGAAGA
TTTTATTTCAGAAACGTGAGCATTTTAGTTCCCATAACCTGGAAGTCAAAAACTGAGTACTTAACACCAA
AACAAGAATCATATGACCAAGCAGACGTCATAGTTGCCGATCCTCACCTGCAACATGGAGACGACCCCTA
CACCCTTCAGTACGGACAGTGTGGGGACAGAGGACAGTACATACACTTCACTCCAAACTTCCTACTCACT
GATAACTTGGGTATCTACGGACCCCGAGGCAGAGTCTTTGTCCATGAGTGGGCCCATCTCCGGTGGGGAG
TATTTGATGAGTATAACATGGACCGGCCTTTCTACATGTCTAGAAAGAACACTGTCGAAGCAACAAGGTG
TTCCACCGACATCACTGGCACCAGTGTGGTCCGTGAGTGTCAGGGAGGCAGCTGTGTGTCGAGGAGATGT
CGTCGAGATGCAAAGACAGGAATGCAGGAAGCCAAGTGTACATTTATCCCAAACAAATCCCAGACTGCGA
GGGGCTCCATCATGTTCATGCAAAGTCTCGATTCTGTGGTTGAATTCTGCACAGAAAAAACCCACAATGT
AGAAGCTCCAAACCTACAAAACAAAATGTGCAATCTCAGAAGCACGTGGGATGTAATCAAGGCGTCTGCT
GACTTTCAGAATGCCTCTCCCATGACAGGAACAGAAGCCCCTCCCCTGCCTACATTTTCACTGCTCAAAT
CCAGACAGCGAGTGGTCTGCTTGGTGCTGGATAAATCTGGAAGCATGCGCTTAGGAAGCCCCATCACTCG
TCTGACCCTAATGAACCAAGCAGCAGAGCTATACTTAATTCAAATTATTGAAAAGGAATCCTTGGTCGGC
CTGGTGACATTTGATAGCACTGCCACAATCCAAACTAACCTAATAAGGATCATCAATGACAGCTCCTACC
TAGCGATCAGCACAAAGCTGCCTCAATACCCAAATGGCGGAACTTCAATTTGCAACGGACTCAAAAAAGG
ATTCGAGGCAATTACCTCCAGTGACCAGAGCACTTCCGGTTCTGAGATCGTATTGCTAACAGATGGGGAA
GATAATAGAATAAGCTCGTGCTTTCAGGAGGTCAAACACAGTGGAGCCATCATCCACACCATCGCGCTGG
GGCCTTCTGCTGCGCGAGAACTGGAGACTCTGTCAGACATGACAGGAGGGCTTCGATTTTATGCCAAGGA
AGACGTGAATGGCCTGATTGATGCTTTCAGTGGGATCTCATCTAAAAGTGGCAGCATCTCACAGCAGGCT
CTGCAGTTGGAGAGCAAAGCCTTCAATGTCGGAGCAGGGGCATGGATAAACAGTACAGTACCTGTGGACA
GTACCGTCGGCAACGACACGTTCTTTGTTATCACCTGGACAGTAAGAAAGCCAGAAATCATTCTTCAAGA
TCCAAAAGGAAAAAACTACACCACCTCCGATTTCCAGGAAGATAAGCTAAATATCTTCTCTGTTCGCCTT
CGGATCCCAGGCATTGCTGAGACAGGCACTTGGACTTACAGCCTCTTAAATAAGGGTGCCACATCTCAGT
TGCTAACAGTGACAGTGACCACTCGAGCAAGAAGTCCCACCACACTCCCAGTCATCGCCACCGCTCACAT
GAGTCAGAGCACAGCCCAGTACCCTAGCCGGATGATTGTGTATGCAAGGGTCAGCCAAGGGTTTTTGCCT
GTTCTGGGAGCCAATGTCACAGCCGTCATAGAAGCTGAGAGTGGAAATCAAGTCACCCTGGAGCTCTGGG
ACAACGGGGCAGGTGCTGACACACTCAAAAATGACGGCATCTACTCAAGATATTTCACAGACTTCCATGG
AAATGGCAGATACAGCTTAAAAGTCAATGCCCAGGCAAGAAAGAACATGGCTAAACTAAATCTGAAACAA
AAGAATAAGTCTCTCTATATACCTGGCTACGTTGAAAATGATCAAATTGTACTGAATCCACCCAGACCGG
AAATCCCAGAAGCCACAGAAGCTACAGTGGAAGACTTCAGCAGACTAACCTCTGGAGGATCGTTTACTGT
GTCTGGAGCGCCCCCTGATGGCGATCACGCTCGTGTGTTTCCACCAAGTAAAGTCACAGACCTGGAGGCT
GAGTTTATAGGTGATCATATTCACCTTACATGGACGGCCCCTGGCAAGGTCCTCGATAAGGGAAGAGCAT
ATAGATACGTCATCAGGATGAGTGGGCATTCTCTGGCTCTCCAAGAAGATTTTAGCAACTCTACTTTAGT
GAATACTTCCAGTGTAATGCCTAAAGAGGCTGGCTCAAAAGAAACATTTAAATTCAAACCAGAAACTTTT
AAAATAGAAAATGGCACCCAAGTCTACATTGCAATCCAGGCTGACAATGAAGCCCGTCTCTCCTCTGAGG
TCTCCAACATTGCACAGGCTGTGAAGTTTATTCCTCCACAAGTTTATTTGACACCCAGCACCCCTCCTGG
TCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGC
ACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGA
GTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCC
TCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACC
CCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTG
GTCTGAGTACCCCCAGCACCCCTCCTGGTCTGAGTACCCCCAGCACCCCTCCTGGTCTGGGTACCAAAGT
GTCCGTACCCAGTTTGACAGTTTTTGTACTTGTTGCAACTTTATTCATATTTTAA

Translation (1044 aa):
MVPGLQVLLFLTLHLLQNTESSMVHLNSNGYEGVVIAINPSVPEDERLIPSIKEMVTQASTYLFEATERR
FYFRNVSILVPITWKSKTEYLTPKQESYDQADVIVADPHLQHGDDPYTLQYGQCGDRGQYIHFTPNFLLT
DNLGIYGPRGRVFVHEWAHLRWGVFDEYNMDRPFYMSRKNTVEATRCSTDITGTSVVRECQGGSCVSRRC
RRDAKTGMQEAKCTFIPNKSQTARGSIMFMQSLDSVVEFCTEKTHNVEAPNLQNKMCNLRSTWDVIKASA
DFQNASPMTGTEAPPLPTFSLLKSRQRVVCLVLDKSGSMRLGSPITRLTLMNQAAELYLIQIIEKESLVG
LVTFDSTATIQTNLIRIINDSSYLAISTKLPQYPNGGTSICNGLKKGFEAITSSDQSTSGSEIVLLTDGE
DNRISSCFQEVKHSGAIIHTIALGPSAARELETLSDMTGGLRFYAKEDVNGLIDAFSGISSKSGSISQQA
LQLESKAFNVGAGAWINSTVPVDSTVGNDTFFVITWTVRKPEIILQDPKGKNYTTSDFQEDKLNIFSVRL
RIPGIAETGTWTYSLLNKGATSQLLTVTVTTRARSPTTLPVIATAHMSQSTAQYPSRMIVYARVSQGFLP
VLGANVTAVIEAESGNQVTLELWDNGAGADTLKNDGIYSRYFTDFHGNGRYSLKVNAQARKNMAKLNLKQ
KNKSLYIPGYVENDQIVLNPPRPEIPEATEATVEDFSRLTSGGSFTVSGAPPDGDHARVFPPSKVTDLEA
EFIGDHIHLTWTAPGKVLDKGRAYRYVIRMSGHSLALQEDFSNSTLVNTSSVMPKEAGSKETFKFKPETF
KIENGTQVYIAIQADNEARLSSEVSNIAQAVKFIPPQVYLTPSTPPGLSTPSTPPGLSTPSTPPGLSTPS
TPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLST
PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLGTKVSVPSLTVFVLVATLFIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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