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Report for CCDS38699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38699.1 Public Mus musculus 4 Prdm13 23 108 98 CCDS HistoryNCBI Gene:230025Re-query CCDS DB by CCDS ID:38699.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095141.3 ENSMUSP00000092761.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095141.3Link to Ensembl Protein Viewer:ENSMUSP00000092761.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095141Re-query CCDS DB by Protein ID:ENSMUSP00000092761
Original member Current member NCBI NM_001080771.1 NP_001074240.1 Accepted alive Link to Nucleotide Sequence:NM_001080771.1Link to Protein Sequence:NP_001074240.1Re-query CCDS DB by Nucleotide ID:NM_001080771Re-query CCDS DB by Protein ID:NP_001074240Link to BLAST:NP_001074240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074240.1 754 E9PZZ1-1 754 100% 0 0

Chromosomal Locations for CCDS 38699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 21678224 21679947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21683418 21683538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21683850 21683981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21685511 21685798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGCCCGCCCACGTCACTCCGCGGACAGAAGACGCACGTCGGGGTGCGGGTCCCTCCTCTGCATGCGGCT
GCTCCTGGTTCTGTCACTTGCGCCCCGTGGAGGACCCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGC
AACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCCCGGCTGGCTTG
CGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCA
AGAAAAAGGTGCGCATGGTGAGAGGGGAGCTGGTGGACGAGTCAGGGGGCTCCCCTCTGGAGTGGATAGG
GTTAATCCGGGCAGCCAGGAATCCCCAGGAACAGACTCTGGAAGCTATTGCAGACTTACCAGGAGGACAG
ATCTTCTATCGGGCATTGCGAGACGTCCAGCCTGGGGAAGAGCTGACTGTGTGGTATTCTAACTCCTTGG
CTCAGTGGTTTGACATCCCTACAACTGCGACTCCAACGCATGATGAGAAAGGGGAGGAGCGCTACATCTG
CTGGTACTGCTGGAGGACCTTTCGCTACCCTAACAGCCTCAAGGCACACCTGCGGTTCCACTGCGTCCTC
AGTGGCGGCGGGGGCCGTGCTTTCCTGCCCCAGGAGCACGCGGCCCGGCCCGGCGCTTCCCCGGTGGCAG
AAGGCCTCGGCCTCCCTCCGAAACCCACCGTCCCGGACTTGACGGCGCCCGTCCAGGCAATCGCTTTGCG
ACCCCAAGCTCCGGCCGCTCAGCTCGCCCAGGCGTGCGGGGCGCGGGAGAGCATCAAGCGGGAGGCTTCC
CTGGCGCCCCTGGCCACCTCCCCGCCGCCGGGCAAGTGGGGAACGCCCAAGAAGGGCAAGGAGCAGCCGG
ACCGCGCGCACAGTCAATTCCTGGGGATAGTGGGCGGCTCCTCGGGCGGCGGCGGAGGCCTGCCATTCTA
CCCAGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGGCCCGGGCGGCTGCGCAGAGCGACCCCTACCGG
GAAGAGGGCGGCGGCAAGGGACCGGGGCTGGCGCTAGGGCGGCTGCTGGGCGGGGGCCGGGCCGGCGGGC
GTCCGGGCAGTGGGGAGAGCCCGGCGGGCCACCACCACCATCACCACCACGCTCACCACCACCACCACCA
CCATCCCAAGTGCCTGCTGGCCGGGGAGCCGCCGCCGGCGGGCCTGCCGTGTCCCGGGGCCCTGAGAGCC
TTCCCCCTGCTCGCCGGCCACCCGGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCGGGCTCCGCCCGCCG
CCGCCACCACCTCCCTGCCCTCCGCGCGCTACGCCGCTCTCCCGGCGCCCGGGCTCCCTGTGGAGCGCTG
CGCGCTGCAGCCCCTCGACGGCGGCAGCCTCAAGGCTTACCCCGGCGGCGGTGGCGGCGGCGAGTGCAGC
CCCCTGCCCGCCGTCATGCCGGCCTTCACGGTGTACAGCGGAGACCTGCTCTACGGCCCTCCGGCCGCCT
ATTACCCTCTCAAGCTGCACTTGGGCGGGCTGCTCAAATACCCCGAGTCCATCTCCTATCTGAGTGGCCC
CGCGGCGGCAGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGGCGATCGGGCCGGCCGAACTGGGC
TCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGA
GTCGCGCCCGCCTGGACTCGGGGACGCTGCCTCCAGCCGTAGTGGCGGCGACGGGCCCCGGGGGTGGCGG
CGGTGGCGGGAGCGCGGCAGGCAAGCCCAAGACAGGCCACTTGTGCCTCTACTGTGGCAAGCTGTACTCG
CGCAAGTACGGGCTCAAGATCCACATGCGGACGCACACGGGCTACAAGCCGCTCAAGTGCAAAGTGTGCC
TGCGGCCCTTCGGCGACCCCAGCAATCTCAACAAGCACATCCGACTCCACGCCGAGGGCAATACGCCCTA
CCGCTGCGAGTTCTGCGGCAAGGTGCTGGTGCGCCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCAC
CCAGGCCAGAGCCTGATGGCCAAGGCGGGCGACGGCCCGGGCCCGGAGCCCAGCTATGCTCTGGAGCCTG
GGGATCCCAAGAGCGAGGACAGTGATGTGGATGTCTGCTTCACTGACGATCAGAGCGACCCCGAGGCTGG
GGGTCGTGGCGAGCACGACTCCTAA

Translation (754 aa):
MPAHVTPRTEDARRGAGPSSACGCSWFCHLRPVEDPASPSVCLAAVATMHGTSRTSATSVNADCCIPAGL
RLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDESGGSPLEWIGLIRAARNPQEQTLEAIADLPGGQ
IFYRALRDVQPGEELTVWYSNSLAQWFDIPTTATPTHDEKGEERYICWYCWRTFRYPNSLKAHLRFHCVL
SGGGGRAFLPQEHAARPGASPVAEGLGLPPKPTVPDLTAPVQAIALRPQAPAAQLAQACGARESIKREAS
LAPLATSPPPGKWGTPKKGKEQPDRAHSQFLGIVGGSSGGGGGLPFYPGVRSAFKPAGLARAAAQSDPYR
EEGGGKGPGLALGRLLGGGRAGGRPGSGESPAGHHHHHHHAHHHHHHHPKCLLAGEPPPAGLPCPGALRA
FPLLAGHPEEASAFKHVERAPPAAATTSLPSARYAALPAPGLPVERCALQPLDGGSLKAYPGGGGGGECS
PLPAVMPAFTVYSGDLLYGPPAAYYPLKLHLGGLLKYPESISYLSGPAAAAAAAAAAAAAAAAIGPAELG
SLASIDREIAMHTQQLSEMAAGKSRARLDSGTLPPAVVAATGPGGGGGGGSAAGKPKTGHLCLYCGKLYS
RKYGLKIHMRTHTGYKPLKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRH
PGQSLMAKAGDGPGPEPSYALEPGDPKSEDSDVDVCFTDDQSDPEAGGRGEHDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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