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Report for CCDS32739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32739.1 Public Homo sapiens 17 FOXJ1 24 110 108 CCDS HistoryNCBI Gene:2302Re-query CCDS DB by CCDS ID:32739.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32739.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322957.7 ENSP00000323880.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322957.7Link to Ensembl Protein Viewer:ENSP00000323880.4Re-query CCDS DB by Nucleotide ID:ENST00000322957Re-query CCDS DB by Protein ID:ENSP00000323880
Original member Current member NCBI NM_001454.4 NP_001445.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001454.4Link to Protein Sequence:NP_001445.2Re-query CCDS DB by Nucleotide ID:NM_001454Re-query CCDS DB by Protein ID:NP_001445Link to BLAST:NP_001445.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001445.2 421 Q92949 421 100% 0 0

Chromosomal Locations for CCDS 32739.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76137353 76138120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76139898 76140395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCGGAGAGCTGGCTGCGCCTCTCGGGAGCCGGGCCGGCGGAGGAGGCCGGGCCGGAGGGCGGCCTGG
AGGAGCCCGACGCCCTGGATGACAGCCTGACCAGCCTGCAGTGGCTGCAGGAATTCTCCATTCTCAACGC
CAAGGCCCCCGCCCTGCCCCCGGGGGGCACCGACCCCCACGGCTACCACCAGGTGCCAGGTTCAGCGGCG
CCCGGGTCCCCCCTGGCGGCCGACCCCGCCTGCCTGGGGCAGCCACACACGCCGGGCAAGCCCACGTCGT
CGTGCACGTCGCGGAGCGCGCCCCCGGGGCTGCAGGCCCCACCCCCCGACGACGTGGACTACGCCACCAA
TCCGCACGTGAAGCCTCCCTACTCGTATGCCACGCTCATCTGCATGGCCATGCAGGCCAGCAAGGCCACC
AAGATCACCCTGTCGGCCATCTACAAGTGGATCACGGACAACTTCTGCTACTTCCGCCACGCAGATCCCA
CCTGGCAGAATTCAATCCGCCACAACCTGTCTCTGAACAAGTGCTTCATCAAAGTGCCTCGGGAGAAGGA
CGAACCAGGCAAGGGGGGCTTCTGGCGCATTGACCCCCAGTACGCGGAGCGGCTACTGAGCGGCGCTTTC
AAGAAGCGGCGACTGCCCCCTGTCCACATCCACCCAGCCTTTGCCCGCCAGGCCGCGCAGGAGCCCAGCG
CTGTCCCCCGGGCCGGGCCGCTGACGGTGAATACCGAGGCCCAGCAGCTGCTGCGGGAGTTCGAGGAGGC
CACCGGGGAGGCGGGCTGGGGTGCAGGCGAGGGCAGGCTGGGGCATAAGCGCAAACAGCCGCTGCCCAAG
CGGGTGGCCAAGGTCCCGCGGCCCCCCAGCACCCTGCTGCCCACCCCGGAGGAGCAGGGTGAGCTGGAAC
CCCTCAAAGGCAACTTTGACTGGGAGGCCATCTTCGACGCCGGCACTCTGGGCGGGGAGCTGGGTGCACT
GGAGGCCCTGGAGCTGAGCCCGCCTCTGAGCCCCGCCTCACACGTGGACGTGGACCTCACCATCCACGGC
CGCCACATCGACTGCCCTGCCACCTGGGGGCCTTCGGTGGAGCAGGCTGCCGACAGCCTGGACTTCGATG
AGACCTTCCTGGCCACATCCTTCCTGCAGCACCCCTGGGACGAGAGCGGCAGTGGCTGCCTGCCCCCGGA
GCCCCTCTTTGAGGCTGGGGATGCCACCCTGGCCTCCGACCTGCAGGACTGGGCCAGCGTGGGGGCCTTC
TTGTAA

Translation (421 aa):
MAESWLRLSGAGPAEEAGPEGGLEEPDALDDSLTSLQWLQEFSILNAKAPALPPGGTDPHGYHQVPGSAA
PGSPLAADPACLGQPHTPGKPTSSCTSRSAPPGLQAPPPDDVDYATNPHVKPPYSYATLICMAMQASKAT
KITLSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAF
KKRRLPPVHIHPAFARQAAQEPSAVPRAGPLTVNTEAQQLLREFEEATGEAGWGAGEGRLGHKRKQPLPK
RVAKVPRPPSTLLPTPEEQGELEPLKGNFDWEAIFDAGTLGGELGALEALELSPPLSPASHVDVDLTIHG
RHIDCPATWGPSVEQAADSLDFDETFLATSFLQHPWDESGSGCLPPEPLFEAGDATLASDLQDWASVGAF
L


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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