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Report for CCDS18452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18452.1 Public Mus musculus 4 Prpf38a 23 108 98 CCDS HistoryNCBI Gene:230596Re-query CCDS DB by CCDS ID:18452.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079213.5 ENSMUSP00000078207.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079213.5Link to Ensembl Protein Viewer:ENSMUSP00000078207.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079213Re-query CCDS DB by Protein ID:ENSMUSP00000078207
Original member Current member NCBI NM_172697.3 NP_766285.2 Accepted alive Link to Nucleotide Sequence:NM_172697.3Link to Protein Sequence:NP_766285.2Re-query CCDS DB by Nucleotide ID:NM_172697Re-query CCDS DB by Protein ID:NP_766285Link to BLAST:NP_766285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766285.2 312 Q4FK66-1 312 100% 0 0

Chromosomal Locations for CCDS 18452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108565225 108565267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108566905 108566953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108567423 108567520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108567614 108567640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108568358 108568470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108570156 108570266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108572806 108572891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108575369 108575490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108576929 108577088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108578985 108579114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCGAACCGTACAGTGAAGGATGCCCACAGCATCCATGGCACCAACCCTCAGTATCTGGTGGAGAAGA
TCATCCGGACGCGAATCTATGAATCAAAGTACTGGAAAGAAGAGTGTTTTGGACTTACAGCTGAACTTGT
AGTGGACAAAGCCATGGAGTTAAAGTTCGTTGGTGGTGTGTATGGTGGAAACATAAAGCCAACTCCTTTT
TTGTGTTTAACCTTGAAAATGCTTCAGATTCAACCTGAGAAGGATATCATTGTTGAGTTCATAAAAAATG
AAGATTTCAAGTATGTCCGGATGCTGGGGGCACTTTACATGCGGCTCACAGGAACTGCAATTGATTGCTA
CAAGTACTTGGAGCCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGAACCGAAATGGAGAGTTTGTG
CTGATGCATGTAGATGAGTTCATTTATGAACTCCTGCACAGTGAGAGAGTCTGTGATATCATTTTGCCCC
GGCTACAGAAACGGTATGTGCTGGAAGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCCCTAGAAGAGGA
CATGGATGATGTGGAGTCTAGTGAGGAAGAGGAGGAGGAAGATGAGAAGCTTGAAAGAGTGCCATCACCT
GACCATCGAAGAAGAAGCTACAGAGATTTGGACAAGCCAAGGCGTTCACCTGCACTGCGCTACAGGAGGA
GCCGGAGTCGTTCTCCCAGAAGGCGGAGTAGATCCCCTAAAAGAAGAAGTCCTTCTCCCCGAAGAGAAAG
GCATAGGAGCAAGAGTCCACGACGCCATCGGAGCAGGTCTAGAGACAGACGACACAGGTCCCGCTCTAAA
TCCCCAGGTCACCACCGTAGTCACAGACATAGAAGCCACTCAAAGTCTCCTGAAAGGTCTAAGAAAAGCC
ACAAGAAGAGCCGGAGGGGAAATGAGTAA

Translation (312 aa):
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGVYGGNIKPTPF
LCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFV
LMHVDEFIYELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSP
DHRRRSYRDLDKPRRSPALRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSK
SPGHHRSHRHRSHSKSPERSKKSHKKSRRGNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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