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Report for CCDS10611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10611.1 Public Homo sapiens 16 GGA2 24 110 108 CCDS HistoryNCBI Gene:23062Re-query CCDS DB by CCDS ID:10611.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309859.8 ENSP00000311962.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309859.8Link to Ensembl Protein Viewer:ENSP00000311962.4Re-query CCDS DB by Nucleotide ID:ENST00000309859Re-query CCDS DB by Protein ID:ENSP00000311962
Original member Current member NCBI NM_015044.4 NP_055859.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015044.4Link to Protein Sequence:NP_055859.1Re-query CCDS DB by Nucleotide ID:NM_015044Re-query CCDS DB by Protein ID:NP_055859Link to BLAST:NP_055859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055859.1 613 Q9UJY4 613 100% 0 0

Chromosomal Locations for CCDS 10611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23467590 23467700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23468886 23468996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23469996 23470165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23474904 23475061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23478368 23478501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23478883 23478911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23479765 23479887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23480645 23480770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23482923 23483004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23486015 23486152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23486710 23486790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23488606 23488709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23491677 23491800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23493360 23493458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23494303 23494378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23495694 23495778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23510321 23510411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGGCGGCGACCGCGGTGGCGGCGGCTGTGGCGGGAACCGAGTCGGCCCAGGGTCCCCCGGGCCCGGCAG
CGTCGCTGGAGCTGTGGCTCAACAAAGCCACAGACCCAAGCATGTCGGAACAGGATTGGTCAGCTATCCA
GAATTTCTGTGAGCAGGTGAACACTGACCCCAATGGCCCCACACATGCGCCCTGGCTACTGGCCCACAAG
ATCCAGTCTCCGCAAGAGAAGGAAGCTCTTTATGCCTTAACGGTGCTGGAGATGTGCATGAACCACTGTG
GGGAGAAGTTCCACAGCGAGGTGGCCAAATTTCGTTTCCTGAACGAACTGATCAAAGTGTTGTCCCCAAA
GTACCTGGGGTCCTGGGCCACAGGAAAAGTTAAAGGAAGAGTCATTGAAATACTCTTCAGTTGGACAGTC
TGGTTTCCGGAAGACATCAAGATTCGAGACGCTTATCAGATGCTGAAGAAACAAGGAATTATAAAACAAG
ACCCTAAACTACCAGTGGATAAAATCTTACCCCCACCATCTCCCTGGCCCAAGAGCTCCATCTTTGATGC
TGATGAAGAAAAGTCCAAGCTTCTGACAAGGCTTCTAAAGAGCAACCACCCCGAGGACCTTCAGGCTGCA
AACCGGTTAATCAAGAATTTGGTCAAGGAGGAACAAGAAAAATCGGAGAAGGTGTCCAAGAGGGTCAGTG
CGGTGGAGGAAGTGCGAAGCCATGTGAAGGTGCTGCAGGAGATGCTGAGCATGTACCGCAGGCCAGGGCA
GGCCCCGCCCGACCAGGAGGCCCTGCAGGTCGTGTATGAGAGGTGTGAAAAGCTGCGGCCCACGCTGTTC
CGGTTGGCGAGTGACACCACTGATGACGATGATGCACTCGCGGAAATTCTCCAGGCAAATGACCTCCTCA
CCCAAGGAGTTCTGCTGTACAAACAGGTGATGGAGGGCCGGGTCACCTTTGGAAACAGAGTGACCAGCTC
ATTGGGAGACATCCCTGTCTCCAGAGTCTTTCAGAATCCAGCAGGCTGCATGAAGACCTGCCCCCTGATT
GACTTGGAGGTGGACAATGGACCTGCGCAGATGGGGACTGTGGTGCCATCTTTGCTTCATCAGGACCTGG
CAGCCTTGGGAATCAGTGATGCTCCTGTTACAGGCATGGTTTCTGGTCAGAATTGCTGTGAGGAAAAGAG
GAATCCCTCCTCCAGCACGCTGCCAGGCGGTGGTGTTCAGAACCCTTCTGCAGACAGGAATTTGCTGGAC
CTCCTCTCAGCACAGCCAGCTCCGTGCCCTCTGAATTATGTTTCGCAGAAAAGTGTCCCCAAGGAAGTGC
CACCAGGTACTAAGTCCTCTCCAGGTTGGTCCTGGGAGGCTGGCCCGTTGGCTCCTTCCCCATCTTCACA
GAATACACCTCTGGCTCAAGTGTTTGTCCCTTTGGAGTCTGTTAAGCCCAGCAGCCTGCCGCCTCTCATT
GTGTATGACCGGAATGGATTCAGAATTCTGCTCCACTTCTCCCAGACGGGAGCCCCTGGGCACCCAGAGG
TACAGGTGCTGCTCTTGACCATGATGAGCACGGCTCCCCAGCCTGTCTGGGATATCATGTTTCAAGTGGC
TGTGCCAAAGTCAATGAGAGTGAAGCTGCAGCCGGCATCCAGCTCCAAGCTTCCTGCATTCAGTCCTTTG
ATGCCTCCAGCTGTGATATCTCAGATGCTGCTGCTTGACAATCCACACAAAGAACCTATCCGCTTACGGT
ACAAGCTGACATTCAACCAAGGTGGACAGCCTTTCAGCGAAGTAGGAGAAGTGAAAGACTTCCCAGACCT
GGCTGTCTTGGGCGCAGCCTAA

Translation (613 aa):
MAATAVAAAVAGTESAQGPPGPAASLELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHK
IQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV
WFPEDIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPEDLQAA
NRLIKNLVKEEQEKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQAPPDQEALQVVYERCEKLRPTLF
RLASDTTDDDDALAEILQANDLLTQGVLLYKQVMEGRVTFGNRVTSSLGDIPVSRVFQNPAGCMKTCPLI
DLEVDNGPAQMGTVVPSLLHQDLAALGISDAPVTGMVSGQNCCEEKRNPSSSTLPGGGVQNPSADRNLLD
LLSAQPAPCPLNYVSQKSVPKEVPPGTKSSPGWSWEAGPLAPSPSSQNTPLAQVFVPLESVKPSSLPPLI
VYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPL
MPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFPDLAVLGAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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