NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38999.1 Public Mus musculus 4 Klhl17 23 108 98 CCDS HistoryNCBI Gene:231003Re-query CCDS DB by CCDS ID:38999.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105569.3 ENSMUSP00000101194.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105569.3Link to Ensembl Protein Viewer:ENSMUSP00000101194.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105569Re-query CCDS DB by Protein ID:ENSMUSP00000101194
Original member Current member NCBI NM_198305.2 NP_938047.1 Accepted alive Link to Nucleotide Sequence:NM_198305.2Link to Protein Sequence:NP_938047.1Re-query CCDS DB by Nucleotide ID:NM_198305Re-query CCDS DB by Protein ID:NP_938047Link to BLAST:NP_938047.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938047.1 640 Q6TDP3 640 100% 0 0

Chromosomal Locations for CCDS 38999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 156230034 156230262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156230505 156230686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156230901 156230974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156231085 156231173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156231547 156231714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156231802 156231946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156232187 156232400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156232629 156232745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156233224 156233445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156233592 156233713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156233803 156234062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156234656 156234756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGCAGCCCCGTGGCGAGCGGCCGGCGGGCAGGACGCAAAGTCCCGAGCACAGCAGCCCGGGGCCCGGGC
CTGAGGCGCCACCGCCGCCCCAACCGCCGGCCCCCGAGGCAGAGCGAGCTCGGCCCCGGCAGGCCCGGCC
TGCAGCCCCGATGGAAGGTGCGATGCAGCTGTTGAGCAGAGAGGGTCACAGTGTGGCACACAACTCAAAG
CGGCACTACCATGATGCTTTTGTGGCTATGAGCCGCATGCGGCAGCGTGGCCTCCTGTGCGACATCGTCC
TGCATGTGGCTGCCAAGGAGATCCGGGCTCATAAGGTGGTGTTGGCCTCCTGTAGCCCCTACTTCCACGC
CATGTTCACAAATGAGATGAGTGAGAGCCGCCAGACACATGTGACACTGCATGACATTGACCCGCAAGCC
TTAGACCAGCTGGTGCAGTTTGCATACACAGCTGAGATCGTGGTGGGCGAGGGCAACGTTCAGACTCTGC
TCCCAGCTGCCAGCCTTCTACAGTTGAATGGTGTTCGAGATGCCTGCTGCAAGTTCCTCCTGAGCCAGCT
GGACCCTTCCAACTGCCTGGGCATTCGAGGATTTGCAGACACACACTCATGCAGTGACCTGCTCAAGGCA
GCACACAGGTACGTGCTGCAGCACTTCGTGGATGTGGCCAAGACTGAGGAGTTCATGCTGTTGCCACTGA
AGCAGGTGCTGGAATTGGTCTCTAGTGATAGCCTGAACGTGCCCTCAGAGGAAGATGTGTACCGTGCAGT
CCTGAGCTGGGTCAAACATGACGTAGACACTCGGAGGCAGCATGTACCAAGGTTGATGAAGTGTGTACGG
CTGCCTCTGCTGAGCCGAGACTTCCTCCTGGGCCACGTGGATGCCGAAAGCCTTGTGAGGCATCACCCTG
ACTGCAAGGATCTGCTCATCGAGGCCCTTAAGTTCCACCTGCTGCCTGAGCAGAGAGGTGTTCTGGGAAC
CAGCCGCACGAGACCCCGTCGATGTGAGGGCGCTGGCCCTGTGCTCTTTGCTGTCGGTGGTGGGAGCCTG
TTCGCGATCCACGGAGACTGTGAAGCGTATGACACGCGGACTGACCGTTGGCATGTGGTGGCCTCCATGT
CTACACGTCGGGCTCGTGTAGGAGTTGCTGCCGTCGGGAACCGACTGTATGCTGTGGGCGGCTACGATGG
AACCTCAGACCTGGCTACGGTGGAGTCCTATGACCCTGTGACAAACACATGGCAGCCCGAGGTCTCCATG
GGCACAAGGCGGAGCTGCCTAGGTGTAGCTGCTCTGCATGGGCTCCTGTATGCAGCTGGTGGCTACGATG
GGGCTTCCTGCCTCAACAGTGCTGAACGATATGACCCACTGACGGGAACATGGACATCCATTGCTGCCAT
GAGCACCCGGAGGCGATATGTGCGTGTGGCCACACTTGATGGGAACCTGTACGCCGTGGGTGGTTATGAC
AGCTCGTCACACCTGGCCACCGTGGAGAAGTATGAGCCCCAGGTGAATTCATGGACACCTGTAGCTTCCA
TGCTGAGCCGGCGCAGCTCAGCAGGAGTAGCAGTGCTGGAGGGTGCCCTGTATGTCGCAGGGGGCAATGA
TGGCACAAGCTGCCTCAACTCAGTGGAGAGATATAGCACCAAGGCTGGTGCCTGGGAGAGTGTGGCACCC
ATGAATATCCGCAGGAGCACACATGACCTGGTGGCCATGGACGGCTGGCTCTACGCCGTGGGGGGCAATG
ACGGCAGCTCCAGCCTCAACTCCATAGAGAAGTACAACCCGAGGACCAACAAGTGGGTGGCGGCATCCTG
CATGTTCACAAGACGCAGCAGTGTGGGCGTGGCGGTGCTGGAGCTGCTCAACTTCCCACCACCTTCCTCA
CCCACGCTGTCTGTGTCCTCTACCAGCCTCTGA

Translation (640 aa):
MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPAPEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSK
RHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQA
LDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKA
AHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVR
LPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSL
FAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSM
GTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYVRVATLDGNLYAVGGYD
SSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWESVAP
MNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSS
PTLSVSSTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH