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Report for CCDS19378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19378.1 Public Mus musculus 5 Uba6 23 108 98 CCDS HistoryNCBI Gene:231380Re-query CCDS DB by CCDS ID:19378.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039373.13 ENSMUSP00000035328.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039373.13Link to Ensembl Protein Viewer:ENSMUSP00000035328.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039373Re-query CCDS DB by Protein ID:ENSMUSP00000035328
Original member Current member NCBI NM_172712.2 NP_766300.1 Accepted alive Link to Nucleotide Sequence:NM_172712.2Link to Protein Sequence:NP_766300.1Re-query CCDS DB by Nucleotide ID:NM_172712Re-query CCDS DB by Protein ID:NP_766300Link to BLAST:NP_766300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766300.1 1053 Q8C7R4 1053 100% 0 0

Chromosomal Locations for CCDS 19378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86112650 86112788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86118024 86118118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86119333 86119420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86120528 86120655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86122305 86122498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86124311 86124428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86126469 86126540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86127700 86127769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86128676 86128739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86128828 86128879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86131213 86131341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86132442 86132522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86132618 86132707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86134974 86135079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86136309 86136490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86137817 86137894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86140356 86140436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86141548 86141626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86142405 86142472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86144335 86144478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86147075 86147141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86147805 86147881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86148869 86148931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86150010 86150113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86152567 86152690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86152826 86152948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86154354 86154434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86159204 86159315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86160279 86160373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86164079 86164107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86164697 86164791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86170555 86170617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86172668 86172738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3162 nt):
ATGGAGCGGTCCGAGCCGTTGGCTGTGCTTTCCTGTGAAGAGGCGTCCTGCTCCTCCTGGGGAGCCTGCG
GTGCAAGTAAAAATTTACCTACCATGACAACAGAATCTTTGGAAATCGATGATGGATTATACAGTCGCCA
GAGATATGTTCTTGGTGACACAGCAATGCAGAAGATGGCCAAGTCCTGTGTCTTCTTAAGTGGTATGGGT
GGTCTTGGAGTGGAAATTGCAAAGAATCTTGTTCTTGCAGGGATTAAGGCCCTAACAATTCATGATACAA
AAAAATGCCAAGCATGGGATCTAGGGACCAATTTCTTCCTGTGTGAAGATGATGTTGTTAATGAGAGAAA
CAGGGCTGAAGCTGTACTTCATCGTATTGCAGAACTAAATCCATATGTTCAGGTCTCATCATCCTCTGCC
CCTCTTGATGAAACCACAGACCTCTCTTTCTTAGAAAAATATCAGTGTGTAGTATTGACTGAAATAAAAC
TGACATTACAAAAGAAGATCAACAATTTTTGCCATTCTCATTGCCCTCCAATTAAGTTCATTAGTGCAGA
TGTACATGGAATTTGGTCCAGGTTGTTTTGTGATTTTGGTGATGAATTTGAAGTTTCAGATACAACAGGA
GAAGAACCAAAAGAAATTTTCATTTCAAACATAACGCAAGCTAATCCAGGTATTGTCACTTGCCTTGAAA
GTCATCCTCACAAGCTTGAGACAGGACAGTTCCTAACATTTCGAGAAATTCATGGAATGACAGGCTTAAA
TGGATCTGTACAACAGATAACTGTCATATCACCATTTTCCTTCAGCATTGGTGATACTACAAAACTGGAC
CCATATTTACATGGAGGCATAGCCGTGCAGGTGAAGACTCCTAAAACATTCTGCTTTGAACCCCTGGAGA
GCCAGATAAAACATCCAAGGTGCCTTATTGCAGATTTTAGCAAACCTGAGGCACCTTTAGAGATTCATCT
CGCTATGCTTGCCTTGGACCAGTTTCAGGAGAACTATAACCGTAAGCCAAATATCAGATGTCAGCAGGAT
TCAGATGAACTATTGAAGCTAACAGTATCTATAAATGAAACCTTGGAAGAGAAGCCTGAAGTGAATGCTG
ACATTGTGCACTGGCTTTCGTGGACTGCCCAAGGCTTTTTACCACCACTCGCTGCTGCAGTTGGAGGTGT
TGCTAGCCAAGAAGTCTTAAAAGCTGTGACGGGGAAGTTCTCGCCCTTGTGTCAATGGTTGTACCTTGAA
GCAGCAGATACTGTGGAATCCCTAGGCAATCCTGGGCATGAAGAGTTTCTCCCACGAGGAGATAGATATG
ATGCCATACGTGCCTGCATTGGAAATACATTGTGTCAGAAGCTACAAAATTTGAATATCTTCTTAGTAGG
ATGTGGTGCCATAGGCTGTGAAATGTTAAAAAATTTTGCATTACTGGGTGTTGGTACAGGCAGAGAGAAA
GGAATGGTAACAGTTACAGATCCTGACTTGATAGAAAAATCCAATTTAAACAGACAGTTCCTGTTTCGTC
CTCATCACATACAGAAACCTAAAAGCTATACTGCTGCTGAAGCAACTCTGAAAATAAATCCTCAATTAAA
AATAGATGCACACCTGAACAAAGTTTGTCCAGCCACTGAGAGTATATACAGTGATGAATTTTACACTAAG
CAAGATATCATTATTACAGCACTAGATAATGTGGAAGCCAGGAGATATGTAGACAGTCGCTGTTTAGCAA
ATCTACGGCCTCTCTTAGATTCTGGAACAATGGGCACCAAGGGACATACTGAAATTATCGTACCTCAATT
AACTGAATCTTATAATAGTCATCGAGACCCCCCCGAAGAGGAAATACCATTTTGCACTCTAAAGTCCTTT
CCAGCAGCTATCGAACATACTATCCAGTGGGCAAGAGACAAGTTTGAAAGTTCCTTCTCCCACAAACCTT
CACTGTTTAACAAGTTTTGGCAAGCATATCCCTCTGCAGAAGATGTCTTACAGAAGATACAAAATGGACA
AAGTTTAGAAGGCTGTTTTCAAGTTATTAAGCTACTTAGCAGAAGACCTAGAATTTGGTCCCAGTGTGTA
GAGTTAGCAAGACTAAAGTTTGAAAAATACTTTAACCATAAGGCTCTGCAGCTTCTTCACTGTTTTCCTC
TTGAGACAAGACTAAAAGATGGCAGTTTGTTTTGGCAATCACCAAAAAGGCCGCCTTCTCCAATAAAATT
TGATTTAAATGAACCTTTGCACCTCAGTTTTCTTCAGAGTGCTGCAAAACTATATGCTACAGTATATTGT
ATTCCGTTTTCAGAAAAGGACTTATCAGTGAATAGCCTCATGGACATTCTTTCAGAAGTTAAAATTGAGG
AATTCAAGCCTTCCAACAAGGTTGTTCAAACAGACGAAACTGCAAGGAAGCCCGACCATGTTCCTGTCTC
CAGTGAAGATGAAAGGAATGCTGTTTTCCAACTAGAAGAGGCTCTTTCCTCTAACAAAGCTACCAAAAGT
GACCTTCAGATGACAGTGCTTTCATTTGAAAAAGATGATGACCGTAATGGACACATAGATTTCATCACAG
CTGCTTCCAACCTTCGAGCCAAAATGTATAGCATTGAACCAGCTGACCGTTTTAAAACTAAACGCATAGC
TGGTAAAATTATACCTGCTATAGCAACATCTACTGCTGCAGTTTCTGGCTTGGTTGCTTTGGAGATGATC
AAGGTAGCTGGTGGCTATCCCTTCGACGCTTACAAAAACTGTTTCCTTAATTTAGCCATTCCAATAATAG
TGTTTACAGAGACATCTGAAGTAAGAAAAACTGAAATCAGAAATGGAATATCATTTACAATTTGGGACAG
ATGGACTGTACATGGAAAAGAAGATTTCACCCTCTCAGATTTCATAAATGCTGTCAAAGAAAACTATGGA
ATTGAGCCGACAATGGTGGTGCAGGGAGTCAAAATGCTTTATGTCCCTGTAATGCCAGGTCATGCAAAAA
GGCTAAAGTTAACAATGCACAAACTTGTGAAGCCTTCCACTGAGAAGAAATATGTGGATCTTACTGTGTC
ATTTGCCCCAGACGCTGATGGAGATGAAGATTTGCCCGGCCCTCCAGTGAGATACTACTTCAGTCATGAC
ACTAATGAGTAG

Translation (1053 aa):
MERSEPLAVLSCEEASCSSWGACGASKNLPTMTTESLEIDDGLYSRQRYVLGDTAMQKMAKSCVFLSGMG
GLGVEIAKNLVLAGIKALTIHDTKKCQAWDLGTNFFLCEDDVVNERNRAEAVLHRIAELNPYVQVSSSSA
PLDETTDLSFLEKYQCVVLTEIKLTLQKKINNFCHSHCPPIKFISADVHGIWSRLFCDFGDEFEVSDTTG
EEPKEIFISNITQANPGIVTCLESHPHKLETGQFLTFREIHGMTGLNGSVQQITVISPFSFSIGDTTKLD
PYLHGGIAVQVKTPKTFCFEPLESQIKHPRCLIADFSKPEAPLEIHLAMLALDQFQENYNRKPNIRCQQD
SDELLKLTVSINETLEEKPEVNADIVHWLSWTAQGFLPPLAAAVGGVASQEVLKAVTGKFSPLCQWLYLE
AADTVESLGNPGHEEFLPRGDRYDAIRACIGNTLCQKLQNLNIFLVGCGAIGCEMLKNFALLGVGTGREK
GMVTVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAAEATLKINPQLKIDAHLNKVCPATESIYSDEFYTK
QDIIITALDNVEARRYVDSRCLANLRPLLDSGTMGTKGHTEIIVPQLTESYNSHRDPPEEEIPFCTLKSF
PAAIEHTIQWARDKFESSFSHKPSLFNKFWQAYPSAEDVLQKIQNGQSLEGCFQVIKLLSRRPRIWSQCV
ELARLKFEKYFNHKALQLLHCFPLETRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQSAAKLYATVYC
IPFSEKDLSVNSLMDILSEVKIEEFKPSNKVVQTDETARKPDHVPVSSEDERNAVFQLEEALSSNKATKS
DLQMTVLSFEKDDDRNGHIDFITAASNLRAKMYSIEPADRFKTKRIAGKIIPAIATSTAAVSGLVALEMI
KVAGGYPFDAYKNCFLNLAIPIIVFTETSEVRKTEIRNGISFTIWDRWTVHGKEDFTLSDFINAVKENYG
IEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPSTEKKYVDLTVSFAPDADGDEDLPGPPVRYYFSHD
TNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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