NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46251.1 Public Homo sapiens 2 WDR43 24 110 108 CCDS HistoryNCBI Gene:23160Re-query CCDS DB by CCDS ID:46251.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407426.8 ENSP00000384302.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407426.8Link to Ensembl Protein Viewer:ENSP00000384302.3Re-query CCDS DB by Nucleotide ID:ENST00000407426Re-query CCDS DB by Protein ID:ENSP00000384302
Original member Current member NCBI NM_015131.3 NP_055946.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015131.3Link to Protein Sequence:NP_055946.1Re-query CCDS DB by Nucleotide ID:NM_015131Re-query CCDS DB by Protein ID:NP_055946Link to BLAST:NP_055946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055946.1 677 Q15061 677 100% 0 0

Chromosomal Locations for CCDS 46251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28894699 28894923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28901987 28902124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28906460 28906581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28912590 28912710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28914069 28914208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28917893 28917995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28922919 28922983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28924982 28925153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28926468 28926554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28927569 28927700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28929579 28929710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28935521 28935607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28936922 28936953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28937931 28937994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28941461 28941574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28942312 28942381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28946450 28946499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28946600 28946779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGCGGCGGGCGGCGGCGGTAGCTGCGACCCCCTGGCCCCTGCTGGGGTCCCTTGCGCCTTCTCCCCGC
ACAGCCAGGCCTACTTCGCTTTGGCCTCTACCGACGGTCACTTACGAGTATGGGAGACGGCCAACAACCG
GCTGCACCAGGAGTACGTGCCTTCCGCGCACCTCAGTGGTACCTGCACCTGTCTGGCCTGGGCGCCAGCG
CGGCTGCAGGCCAAGGAAAGTCCCCAGAGGAAAAAAAGGAAATCAGAAGCTGTAGGAATGAGTAACCAGA
CTGACTTATTGGCTCTTGGCACAGCAGTTGGTAGCATTTTATTATACAGCACAGTAAAAGGAGAGTTACA
CAGTAAATTAATAAGTGGTGGACATGACAACAGAGTCAACTGCATACAGTGGCATCAAGACAGTGGCTGT
TTATATAGTTGTTCAGATGATAAACATATTGTGGAATGGAACGTACAGACATGCAAAGTAAAGTGCAAAT
GGAAAGGCGACAATAGCAGTGTCAGTTCCCTATGTATCAGCCCAGATGGAAAGATGTTGCTTTCAGCTGG
TCGAACAATCAAACTATGGGTTTTGGAGACCAAAGAAGTCTACAGGCATTTCACAGGACATGCAACGCCA
GTTTCGTCACTGATGTTCACTACCATCAGACCTCCTAATGAGAGCCAGCCCTTTGATGGAATTACAGGTC
TTTATTTCTTATCTGGAGCAGTACATGACCGGTTACTTAATGTCTGGCAGGTCCGATCAGAAAACAAAGA
AAAGAGTGCAGTGATGTCATTTACAGTTACCGATGAACCTGTCTATATTGACTTAACTTTGTCAGAAAAC
AAAGAAGAGCCTGTCAAGTTGGCTGTTGTTTGCAGAGATGGTCAAGTCCATCTTTTTGAACACATATTAA
ATGGGTACTGCAAAAAGCCTTTGACTTCAAACTGCACAATTCAGATAGCAACACCTGGGAAAGGCAAGAA
GTCAACACCAAAACCCATCCCTATTCTAGCTGCTGGTTTTTGCTCAGACAAAATGTCATTGTTGCTTGTA
TATGGCAGTTGGTTTCAGCCTACTATTGAGCGAGTGGCTTTAAACTCCAGAGAACCTCATATGTGTTTAG
TAAGAGATATTTCAAACTGCTGGGCCCCCAAAGTAGAAACAGCTATAACAAAGGTGAGGACACCAGTGAT
GAATTCTGAAGCAAAAGTTCTGGTGCCTGGGATTCCTGGTCATCATGCAGCTATCAAGCCCGCTCCTCCA
CAAACCGAGCAAGTAGAGAGCAAGAGGAAGTCAGGGGGAAATGAGGTTAGCATTGAAGAACGTCTGGGAG
CAATGGATATAGACACACACAAAAAAGGAAAGGAAGACCTCCAGACGAATAGCTTTCCAGTTCTTCTTAC
CCAGGGCTTAGAAAGTAACGATTTTGAAATGCTAAATAAAGTACTTCAAACTAGGAATGTAAACCTTATA
AAGAAGACTGTATTAAGGATGCCCCTGCATACTATTATTCCGTTGTTACAAGAGCTTACAAAGAGGTTAC
AAGGACATCCTAATAGTGCTGTGCTAATGGTTCAGTGGCTAAAATGTGTGTTAACAGTTCATGCATCATA
CCTGTCCACGTTGCCTGACCTGGTACCCCAGCTGGGGACACTCTACCAGTTAATGGAAAGCAGAGTCAAA
ACTTTTCAGAAACTTTCACACCTTCATGGAAAGCTTATTCTTCTAATTACACAAGTAACAGCATCAGAGA
AGACAAAGGGAGCAACTTCCCCTGGACAGAAGGCAAAGTTGGTGTATGAAGAAGAGTCTTCTGAAGAGGA
GTCTGATGATGAAATAGCAGATAAGGATTCTGAAGATAATTGGGATGAAGATGAGGAGGAGAGTGAAAGT
GAAAAAGATGAGGACGTTGAAGAGGAAGATGAGGATGCCGAAGGAAAAGATGAAGAAAATGGCGAGGACA
GAGATACAGCAAGTGAAAAAGAATTAAATGGAGATTCTGATTTAGATCCTGAAAATGAAAGTGAAGAAGA
ATGA

Translation (677 aa):
MAAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPA
RLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISGGHDNRVNCIQWHQDSGC
LYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATP
VSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSEN
KEEPVKLAVVCRDGQVHLFEHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSLLLV
YGSWFQPTIERVALNSREPHMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPP
QTEQVESKRKSGGNEVSIEERLGAMDIDTHKKGKEDLQTNSFPVLLTQGLESNDFEMLNKVLQTRNVNLI
KKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMESRVK
TFQKLSHLHGKLILLITQVTASEKTKGATSPGQKAKLVYEEESSEEESDDEIADKDSEDNWDEDEEESES
EKDEDVEEEDEDAEGKDEENGEDRDTASEKELNGDSDLDPENESEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH