NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19830.1 Public Mus musculus 5 Tnrc18 23 108 98 CCDS HistoryNCBI Gene:231861Re-query CCDS DB by CCDS ID:19830.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151477.7 ENSMUSP00000114769.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151477.7Link to Ensembl Protein Viewer:ENSMUSP00000114769.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000151477Re-query CCDS DB by Protein ID:ENSMUSP00000114769
Original member Current member NCBI NM_178242.3 NP_839973.1 Accepted alive Link to Nucleotide Sequence:NM_178242.3Link to Protein Sequence:NP_839973.1Re-query CCDS DB by Nucleotide ID:NM_178242Re-query CCDS DB by Protein ID:NP_839973Link to BLAST:NP_839973.1

Chromosomal Locations for CCDS 19830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142755373 142755659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142759711 142760071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142762990 142763161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142764769 142764897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142765051 142765187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142765913 142766088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142771305 142772303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142773619 142774045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142775209 142775399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142775829 142775975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142776176 142776381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142776646 142776742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142787134 142788759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142790064 142790189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142815015 142815201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5268 nt):
ATGGATGGCCGAGATTTCGGGCCCCAGCGGTCCGTCCACGGCCCCCCGCCGCCGCTGCTGTCCGGCTTGG
CCATGGACAGCCACCGCGTGGGCGCGGCCACCGCCGGACGCTTGCCCTCCTCGGGCTTGCCAGGTCCCCC
GCCGCCCGGGAAATACATGGCCGGTCTCAACCTTCACCCGCACCCGGGCTTCTCCCACCTGCCCAGTGGG
CTATATCCATCCTACCTCCACCTGAACCACCTGGACCCCCCCAGCAGTGGGAGCCCCCTCCTCAGCCAGC
TGGGTCAGCCCAGCATCTTCGATACCCAGAAAGATGGCTTCTACCTGCCCGCACCGGGGACCCTGCATGC
TCACACGCCCTCGTCCAGAACTCCCAGTGGCCACTCCTCAGGTGGTCCAGCCAAAGGCTCCTCCCGGGAA
GGTACAGGGAAGGATCGTGCAGGCCGTGGTGGAGACCCTCCTCCGTTGTTTGGCAAGAAAGACCCTCGGG
CACGTGAGGAGGTGTCCGGGCCCCGAGGTGTGGTGGACTTGACCCAGGAGGCCCGAGCGGAGGGCCGCCA
GGACCGAGGATCCTCACGCCTGGCTGAGCGCCTGTCTCCCTTTCTGGCAGAGGTCAAAGCCAAGGGTGCA
CTGCAGCCGTCGGCCCTGAGCCTGTGCAATGGTGTGGTGGACGCGGGGCTGGTGGCCGAGTTGGGCCGTG
GAGGTGCCAAGGAGGTAGCCAGGCAGGAGGAGAATGCTCGGCTGCTGAGGCGGGCTGAGGCCCTGCTGCC
CGCTGCAAGGCCCTGTGGGTCCCCACTACCGCCGCCACCTCCACTGCCCCCCAAGGGTCCCCCTGCACCC
CCTTCCTCTACACCAGCCGGTGTGTACACCGTGTTCCGTGAACCAGGCCGTGAGCACCGCGTGGTGGCAC
CCACCTTTGTGCCTTCTGTGGAGGCCTTTGATGAGCGGGTGGGACCCATCCAGATAGCATCCCAGGCTCG
CGATGTCCGGGCCAGGGAGCGTGAGCCGGGCCGTCCTGGGGTCCTGCAAGGTCCACCCGGATCTCCACGC
CTGGAGCGGCCAGAGGTTCTGCGGGAGAAAAGCTCGGTCATCCGCTCCCTCAAGCGTCCGCCTCCATCCG
ATGGACCCCCAGCAGCCCGCTCCTCCCGCTCCTCCCCGGATGCGCGAGCCTACCTGCCCCCCAAGGAACT
ACTCAAGCCCGAGGCTGATCCGAGGCCTTGCGAGCGCGCACCCCGAGGCCCGAGCGCTTCTGCTGCCCAG
CAGGCTGCTAAGCTCTTTGGCCTGGAACCATCCCGACCCCCCGGGCCGGAGCATAAGTGGAAACCCTTTG
AACTGGGCAACTTCGCCACCACGCAGATGGCTGTCCTGGCAGCCCAGCACCACCATGCCAGCAGAGCCGA
AGAGGAAGCAGCTGTCGCCACAGCATCCAAAAAGGCCTACCTGGACCCCGGGGGCGCAATGCCCCGTGCC
TCGGCCACCTGCGGCAGGCCAGGTGCTGACCTCCACTCGGCAGCCCACGGACCCGGAGAGGCCTCTGCTA
TGCAGAGCCTCATCAAATACAGCGGTAGCTTTGCTCGGGAGGCGGTGGCAGTGCGCCCTGGTGGCTGTGG
GAAGAAGAGCCCCTTTGGAGGCCTGGGCACCATGAAACCTGAACCTACGCCCACGTCGGCGGGTCCCCCT
AGAGCCCAGGCCCGGCTCACACACCCCGGGGTCCCTACAGCCGGAGGGGGCCGGCAGCTGAAACGGGACC
CAGAGAGACCTGAGAGCGCCAAGGCCTTTGGGAGAGAGGGCTCTGGTGCCCAGGGGGAAGCCGAAGTAAG
ACACCCGCCTGTTGGCATTGCTGTGGCTGTGGCCCGGCAGAAGGACAGTGGAAGCAGTAGCCGGCTGGGG
CCTGGGCTGGGAGACCAGGAACGCACTTTGTCACTGAACAATGTCAAAGGGCATGGCCGGACTGATGATG
AGTGTGATCGAGCCAGGCATCGGGAGGATCGGCTGCTAGGGACACGGCTGGACCGGGACCAGGAGAAGTT
GCTCCGAGAAAGTAAGGAGCTGGCTGACCTGGCCCGTCTACACCCCACCAGCTGCGCTCCCAATGGCCTG
AACCCCAACCTTATGGTGACTGGTGGCCCAACGCTGGCAGGCTCGGGACGCTGGTCTGCTGATCCTGCTG
CTCATTTGGCCACGAACCCCTGGCTGCCACGCTCGGGTAGTACATCCATGTGGCTTGCCGGACACCCTTA
TGGCCTGGGACCCCCCTCTTTGCACCAGGGCATGGCCCCTGCATTTCCACCTGGCTTAGGGGGCTCCTTG
CCGTCAGCTTACCAGTTCGTCAGGGACCCCCAGTCTGGCCAGCTGGTGGTTATCCCTAGTGATCACCTGC
CTCATTTTGCCGAGCTGATGGAGCGCGCGGCGGTGCCGCCCCTCTGGCCGGCCCTGTACCCACCAGGCCG
CAGCCCACTGCACCACGCTCAGCAGCTGCAGCTCTTCTCTCAGCAGCACTTTTTGAGGCAGCAAGAACTG
CTCTACCTGCAACAGCAGGCGGCCCAGGCCCTGGAGCTGCAGCGGAGCGCACAGCTGGTGGAGCGGTTGA
AAGCACAAGAGCATCGAACGGAGATGGAGGAGAAGATTAGCAAGAGGAGCCTGGAGACCACGGGCAAGGC
CGGCCTGAGTGCCGCAGGCCCTGGGCTCCTGCCTCGAAAGTCTGCCGGCCTGGCCAACGGCCCGGCAGGC
AGCCACGGCAAGGCCGTGAGCCCACCCCCGTCTCCCCGAGCCTCCCCCGTGACCTCTCTGAAGGCCAAGG
TCATCCAGAAGGTGGAAGATGTGTCTAAGCCTCCAGCCTATACCTACCCCGCCACACCTAGCTCGCACCC
CAGCAGCCCACCACCTGCCTCCCCACCTCCTACCCCTGGGCTCACCCGAAAGGAAGAGGCTCCCGAGAAC
GTGGTGGAGAAGAAAGACCTGGAGTTGGAGAAGGAGACGCCCAGTCCGTTCCAGGCCCTGTTCACAGATA
TTCCTCCCAGGTATCCATTCCAAGCCCTGCCGCCGCACTACGGGCGACCCTACCCCTTCCTGCTGCAACC
CGCTGCGGCCTCTGATGCCGATGGCCTCGCCCCAGATGTGCCACTCCCAGCTGATGGGCCCGAGCGCCTG
GCACTGTCTCCTGAAGATAAGCCCATCTGCCTGTCACCCTCCAAGATCCCAGAGCCACCTCGGGACAGCC
CAGAGGAGGAGCAGCTGGCTGACCGGGAGGTGAAGGCTGAAGTTGAGGATATCGAAGAGGGCCCCACAGA
ACTGCCTCCCCTTGAGTCACCATTGGCCCTGCCCGTCCCAGAGACCATGGTGGCCGTGAGCCCCGCAGGT
GGCTGTGGAGGTAGTCCTCTCGAGGCCCAGGCGTTGAGCACAGCAGGTCCGGGCTGCCGGGAGCCCTCTG
AAGTTTCAGACTTTGCACAGGTTGCCGAGCCGCAGATAGAACTACCGAGTAAGACAGAGCACCGCATGAC
TGCCCTGGAGTTGGGGACACAGCTGACACCCGAGCCACTGGTAGAGACTAAGGAAGAGCCGGTGGAGGTG
CCCCTGGATGTGCCGATGGAGGAGCCCACCACAGAGGCAGGGCCTGAGGACAGTCTGCCCCAGCCATCTT
TGACTGAGCCTCAGCCCAGCCTTGAGCTCTCAGACTGTGATTTGCCTGTCCCAGAGGGCCAGTGTCTCAA
CCTGGAGGCCCAGGAGGCTGTGCCTGCTCCTGCCAGTACCTGTTATCTGGAAGAGACCCACTCCGAATCC
CTCCTGCCTGGCCTGGATGACCCACTGGCCGGCATGAATGCACTGGCAGCTGCAGCCGAGCTGCCCCAAG
CCAGGCCTCTGCCCTCCTTGGGTCCTGGAGTCCCAGCCGGGGAGAAGCTGGATACAGCCCCCAGCCTCGT
CCTGGAACACAGCTTTCTGCAGGGCATCACCCTCTTGAGTGAGATAGCTGAGCTGGAGCTGGACCGGAGG
GGCCAGGAGGCTGCAGATCCAGAGCCAAACCTGGTGGTGCGACCCTCCCTCGAAAGCCTGCTGGCAGCCA
GCAGCCACATGTTGAAGGAGGTGCTGGAGAGCCCCTTCTCAGACCCGCTCAAGAACTTGCGGCTTCCGCG
TGAACTGAACTCCAATAAGAAATATAGCTGGATGCAGAAGAAGGAAGAGCGGATGTTTGCTATGAAATCT
TCCTTGGAGGACATGGATGCGCTAGAGCTGGACTTCCGGATGCGGCTGGCAGAGGTCCAGCGAAGGTACA
AAGAGAAACAGCGGGAGTTGGTCAAGCTCCAGAGACGCCGGGACTCGGGGGACAGGCACGAGGATGCCCA
TAGAAGCCTGGCACGCAGAGGCCCTGGCAGGCCGAGGAAACGGACCCACACCCTGAGCGCCCTGTCGCCC
CCCTGCAAGAGAGGGAAGAGCCACAGCAGTAGCGGAAAGCTGAGCAGCAAGTCCTTGCTGACATCAGACG
ACTATGATCTGGGAGCGGGGATAAGGAAGAGACACAAGGGGCCCGAGGAGGAGCAAGAGGCCCTCATGGG
CATGGGGAAAGCCCGCAGCAGGAACCAGAGCTGGGACGATCACGACTCCTCATCTGATTTTATGAGTCAG
CTAAAGATTAAGAAAAAAAAGATGGCAAGCGACCAGGAGCAGTTGGCAAGCAAGCTAGACAGAGCCCTCT
CCCTCACAAAACAAGACAAGCTGAAGTCACCCTTCAAGTTTTCCGACGGCCCCGGGGGAAAACCGAAAAC
CGGTGGGGGCTGTGGCAGGTTCTTGACACAGTATGACAGCCTGCTGGGCAAGGACAGGAAAGCACTGGCC
AAAGGACTCGGCTTGTCTCTGAAACCCTCCAGAGAAGGTAAACACAAAAGAGCTTCCAAAGCCAGGAAGA
TGGAGGGGGGCTTCCAGGCCAGAGGCCAGCCCAAGTCTGTCCATTCTCCATTTGCCTCGGAAGTCAGCAG
TCAGTCTTACAATACGGACTCTGACGAAGACGAAGACTTCCTGAAGAATGAGTGGTCTGCCCAGGGCCCC
TCCAGCTCCAAACTGACCTCGTCCCTCCTGTGTGGCATGGTGCCCAAGAACAGCAAGCCAGCCACAGGCC
CTAAGCTGACCAAGAGGGGCCTGGCAGGCCCCCGGACTTTGAAACCCAAGGTGGTCACCAGCAGGAAGCA
GTCCTTCTGTTTGCTGCTCCGAGAGGCTGAGGCCCGCTCCTCCTTCAGCGACTCTTCCGAGGAGGACTCC
TTTGACCAAGGTTACTAG

Translation (1755 aa):
MDGRDFGPQRSVHGPPPPLLSGLAMDSHRVGAATAGRLPSSGLPGPPPPGKYMAGLNLHPHPGFSHLPSG
LYPSYLHLNHLDPPSSGSPLLSQLGQPSIFDTQKDGFYLPAPGTLHAHTPSSRTPSGHSSGGPAKGSSRE
GTGKDRAGRGGDPPPLFGKKDPRAREEVSGPRGVVDLTQEARAEGRQDRGSSRLAERLSPFLAEVKAKGA
LQPSALSLCNGVVDAGLVAELGRGGAKEVARQEENARLLRRAEALLPAARPCGSPLPPPPPLPPKGPPAP
PSSTPAGVYTVFREPGREHRVVAPTFVPSVEAFDERVGPIQIASQARDVRAREREPGRPGVLQGPPGSPR
LERPEVLREKSSVIRSLKRPPPSDGPPAARSSRSSPDARAYLPPKELLKPEADPRPCERAPRGPSASAAQ
QAAKLFGLEPSRPPGPEHKWKPFELGNFATTQMAVLAAQHHHASRAEEEAAVATASKKAYLDPGGAMPRA
SATCGRPGADLHSAAHGPGEASAMQSLIKYSGSFAREAVAVRPGGCGKKSPFGGLGTMKPEPTPTSAGPP
RAQARLTHPGVPTAGGGRQLKRDPERPESAKAFGREGSGAQGEAEVRHPPVGIAVAVARQKDSGSSSRLG
PGLGDQERTLSLNNVKGHGRTDDECDRARHREDRLLGTRLDRDQEKLLRESKELADLARLHPTSCAPNGL
NPNLMVTGGPTLAGSGRWSADPAAHLATNPWLPRSGSTSMWLAGHPYGLGPPSLHQGMAPAFPPGLGGSL
PSAYQFVRDPQSGQLVVIPSDHLPHFAELMERAAVPPLWPALYPPGRSPLHHAQQLQLFSQQHFLRQQEL
LYLQQQAAQALELQRSAQLVERLKAQEHRTEMEEKISKRSLETTGKAGLSAAGPGLLPRKSAGLANGPAG
SHGKAVSPPPSPRASPVTSLKAKVIQKVEDVSKPPAYTYPATPSSHPSSPPPASPPPTPGLTRKEEAPEN
VVEKKDLELEKETPSPFQALFTDIPPRYPFQALPPHYGRPYPFLLQPAAASDADGLAPDVPLPADGPERL
ALSPEDKPICLSPSKIPEPPRDSPEEEQLADREVKAEVEDIEEGPTELPPLESPLALPVPETMVAVSPAG
GCGGSPLEAQALSTAGPGCREPSEVSDFAQVAEPQIELPSKTEHRMTALELGTQLTPEPLVETKEEPVEV
PLDVPMEEPTTEAGPEDSLPQPSLTEPQPSLELSDCDLPVPEGQCLNLEAQEAVPAPASTCYLEETHSES
LLPGLDDPLAGMNALAAAAELPQARPLPSLGPGVPAGEKLDTAPSLVLEHSFLQGITLLSEIAELELDRR
GQEAADPEPNLVVRPSLESLLAASSHMLKEVLESPFSDPLKNLRLPRELNSNKKYSWMQKKEERMFAMKS
SLEDMDALELDFRMRLAEVQRRYKEKQRELVKLQRRRDSGDRHEDAHRSLARRGPGRPRKRTHTLSALSP
PCKRGKSHSSSGKLSSKSLLTSDDYDLGAGIRKRHKGPEEEQEALMGMGKARSRNQSWDDHDSSSDFMSQ
LKIKKKKMASDQEQLASKLDRALSLTKQDKLKSPFKFSDGPGGKPKTGGGCGRFLTQYDSLLGKDRKALA
KGLGLSLKPSREGKHKRASKARKMEGGFQARGQPKSVHSPFASEVSSQSYNTDSDEDEDFLKNEWSAQGP
SSSKLTSSLLCGMVPKNSKPATGPKLTKRGLAGPRTLKPKVVTSRKQSFCLLLREAEARSSFSDSSEEDS
FDQGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH