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Report for CCDS39493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39493.1 Public Mus musculus 6 Itprid1 23 108 98 CCDS HistoryNCBI Gene:232016Re-query CCDS DB by CCDS ID:39493.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044729.6 ENSMUSP00000045332.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044729.6Link to Ensembl Protein Viewer:ENSMUSP00000045332.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044729Re-query CCDS DB by Protein ID:ENSMUSP00000045332
Original member NCBI NM_001081665.1 NP_001075134.1 Updated not alive Link to Nucleotide Sequence:NM_001081665.1Link to Protein Sequence:NP_001075134.1Re-query CCDS DB by Nucleotide ID:NM_001081665Re-query CCDS DB by Protein ID:NP_001075134
Current member NCBI NM_001081665.2 NP_001075134.1 Accepted alive Link to Nucleotide Sequence:NM_001081665.2Link to Protein Sequence:NP_001075134.1Re-query CCDS DB by Nucleotide ID:NM_001081665Re-query CCDS DB by Protein ID:NP_001075134Link to BLAST:NP_001075134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075134.1 1034 Q14B48-1 1034 100% 0 0

Chromosomal Locations for CCDS 39493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55872485 55872647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55874300 55874348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55874692 55874735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55884696 55884747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55886999 55887085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55889019 55889221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55897665 55898251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55901439 55901496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55967060 55967142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55967622 55968809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55975588 55975715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55976343 55976454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55978163 55978513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3105 nt):
ATGATAATGGAGGAATTACAAGGATCTGACACTCCCAGAGCAGGTCTGGAGATGAGCAAGAGAGATATCC
TAAGACATACGAAGAGGGCATGGGCACCTCTGGATGGGCATCTGCTTCCTGACTCTGAGGAAGAAAACCC
AATGGTCACTATGTATGTGCAAGAAAATTCCAAACAGGAAAGTATCCAGCAGTGGCTAGACTCTGGATTC
TTTGTCTCTGTAAATGAAAACTTCCAGCAAACCATCAACCATACTGCTTCTTTGCACGAACAAGGAATCA
TTCAAATGACCGTGAAAGACTACATGAGATCTCTACATCAGTTCTCAGAGACTCCTACCCTGTCCAGAGG
GACTAGTTTCAACTCGTGTTATTCCACCACAGGTGTACCTCAAAGCATTCCTGAATGGCTGGAATTTTGG
GAAAAAGATCCAGTGGAGATTCTCTTGGACTTGGGGTTTGGTGCTGATGAACCAGATATCTGCACACAAA
TCCCAGCCCGGTTCCTTGGCTATAGCTCAGCAGCCAGAGGAATTAACATCCATGTTTTTCTTGAAGCACA
GAAGCAGCGGATGGACTTTGAGAACCCTGACTTATATGGTCGGTTCCAACAGTTGGAAATCCTGGATCAT
GTGACCAATGCCTTCTCTTCTTTGCTGGATGGTGTTAAAACCCAACAGAACCAACATGAAGAAAAAGCTG
AAAGACAGGCTATGCAAAATCCTTCATCAAGTGGAGCTAAAGAACATAAGAGAAAAATGAGCCAACTTTT
AAAAAGAGCTTCAAGACAGACGAGCAGGATGGATGGTAACCCAGCACTGTCAAAATCATGCAAGACAGAA
CATGAGATTCCAACTCTGCCAACCAAGCCATGGGATCCTAGAGTGGAGCTACAGGTGGCTTCCATTAGCC
ATGATGCAAGTCAAATGCTTCCATTAATAGAGTGTGGTTCTGCCCAAGTCCACAATGACTTGTCACCTTG
TCCTCCTCTTTGTCCTCCTCCGCATGCTCTTCTGGACAAGCCATGGCCTTGCTCATGCACACTGGCCAAG
CAATCTCCTCATACCTGTTTGTCTGAGGGGTCAGTTAGAAGGAGAAACTGGAAGGAGAAATGGAATCACA
TGGACAGACTCAAGAACTTGTCACACATTGTGAGTAAAGGACCAGATTCCTTTGAAATGGAAGAGGTCCA
GAGCTTTGAAGAAGACACTGGCAACCCTCTTATCCTGACATCAGGAATTGTAGGCACTCGAGTGGACAGA
ACAAACAGCTGTCAGTCTGATAGCAGTGGATTTTTAGAAGAGCTACCAGAGCTCCAGCCCCTCCAGGTGT
CTTCCATGACAGGCAGCCAGAGTCCTACTGTCTGTAGAGGTTGCAAACCAAGGGATCAGAGTCATAGTCC
AGCATCACAGCAAGACTCTCTGCAGGAGTCATATGGCTCTAAATCCAAGAGCATGACAAGCTCATCTTTG
TTGAGCCAAGATTGGAGTACATTGGAAGAAAATGCTTCAGCTTCTGTGGTGGAGGAGGAGCTTCAACTCA
AGGCCATGGAAGAGCCACCAGAAATAGTCAACCCAGATATGACCCTCATCAAGACTATCATGGTGGGAGA
ACACCCAGAGAGTGTTGCTGGACCTGTGGTCACTTCTACTTCTACATGTAATAACACAATGGGGGTCTTG
GTGACTCATGTCACAGAAAAGGAAGATAGGTCTGTAGGCCACAAGGGTACTCGAAAAATGCTGATACAAA
GGCACCACTTTGAGTCACCAAGGTCATTCAGGATTGATCAGCCTTCAGACAATTTCTATCATGTGGACTC
TGAGATCACCAAAACAGAGGACAACTGCAAAGTCTGCCCTGATACCAAGCAAAGCTCACTGGTGCAGGAG
AGGCCAGCACAGCACTCTCACCAGCACAGAGGAGCCATGCCCTATAAAGGCGACCTTGTTCAAACCTCTG
AAAAGTCAATTCCCCACCTTGATAAGCCACCTGGACATGTTCCCACTGACTCAAATGCTGCCAGCTCTTG
GTCTGTGACAACCCAGATGTCCTCCAATCTGGTGTCAGCTGCTCAGAGGGTTGCAGACCTAGGGACCTAT
AATAAAGGAACAGCTTTTGAATGCACTCCATGTGACCCTCTTAATACCACAGACCTAAAACTGCAGACAG
AAACAAGGCAGGTCAAGGATGTTGCTGTTCAGACTTATGCACATGAATGCAAGCTCAGGCCATCACATAA
TGACTTCATTCATGGGCCTCGGCCCCTCGCCAAATCCATCTCTTTGGATACAGGTTTTCCTAGTATCTCC
GCAACAGGCTTCTGCCACACCATACCTGCCCACTGTTGTGTCTGCTGTCATCACTGCCCCAACTGCCAAT
GGAGGAGGCAAAGCCCTGGCCCAGAACCCTCTATTTGCAGGCATTCCCTGTATTCACAAGCAGAGGATCC
TAAAGTGCAGTTCATGAAGACATTGAAAATACTCCAAGACACTACTGTGAGGGACCTGTGTTCTTGCACA
GTCTACGAGATGGAAACCATGAAGATGGTGTGCCAGAGTTTCCGGGAGCACTTAGAGGAAATCGAGCAGC
ACTTCATGGGACAGCAGGCACTCTATCCCAGGGACATGTCAGAAGAGGAAAGGGAAGAGGCTGAGTACCT
GAGGACTTTGCGAGAAGCCCTGAGGCAGCAAGTGGCAGAGCTGGCCTTTCAGTTAGGAGACAGAGCCAGG
CAAATCAAAGAAGGGATCCTACTGCAGCTAGACCTTCTGTGTGAGGAGCTACCTGAACACTGCGACAATC
TGCCACAATGCAACTGGACAGAAGGAAAGCATGGCCAGAGATCATGTGTTCAAACCCATGCTGTGGCCCC
TGATCCCACCCTTCCTGCCAGTAGTGGCCAGTGGACTCCCTGCTCTGGGATGACTCAGCCAGTTGCTCTT
AGTCCCTCTCACCTTGAGACCAGAGGAGGGATATCTCTACAGTCACCAGCTAGGGCAGAATCAGGTCCGG
GTCCTTCACTCAGTCATGTTGGAGAGAAGTCTCTGTTAGACCAAAGTGGGTTTGATGATCTTTGTACAAA
ATGCAATGTCCAAGAGCAGCTTTAA

Translation (1034 aa):
MIMEELQGSDTPRAGLEMSKRDILRHTKRAWAPLDGHLLPDSEEENPMVTMYVQENSKQESIQQWLDSGF
FVSVNENFQQTINHTASLHEQGIIQMTVKDYMRSLHQFSETPTLSRGTSFNSCYSTTGVPQSIPEWLEFW
EKDPVEILLDLGFGADEPDICTQIPARFLGYSSAARGINIHVFLEAQKQRMDFENPDLYGRFQQLEILDH
VTNAFSSLLDGVKTQQNQHEEKAERQAMQNPSSSGAKEHKRKMSQLLKRASRQTSRMDGNPALSKSCKTE
HEIPTLPTKPWDPRVELQVASISHDASQMLPLIECGSAQVHNDLSPCPPLCPPPHALLDKPWPCSCTLAK
QSPHTCLSEGSVRRRNWKEKWNHMDRLKNLSHIVSKGPDSFEMEEVQSFEEDTGNPLILTSGIVGTRVDR
TNSCQSDSSGFLEELPELQPLQVSSMTGSQSPTVCRGCKPRDQSHSPASQQDSLQESYGSKSKSMTSSSL
LSQDWSTLEENASASVVEEELQLKAMEEPPEIVNPDMTLIKTIMVGEHPESVAGPVVTSTSTCNNTMGVL
VTHVTEKEDRSVGHKGTRKMLIQRHHFESPRSFRIDQPSDNFYHVDSEITKTEDNCKVCPDTKQSSLVQE
RPAQHSHQHRGAMPYKGDLVQTSEKSIPHLDKPPGHVPTDSNAASSWSVTTQMSSNLVSAAQRVADLGTY
NKGTAFECTPCDPLNTTDLKLQTETRQVKDVAVQTYAHECKLRPSHNDFIHGPRPLAKSISLDTGFPSIS
ATGFCHTIPAHCCVCCHHCPNCQWRRQSPGPEPSICRHSLYSQAEDPKVQFMKTLKILQDTTVRDLCSCT
VYEMETMKMVCQSFREHLEEIEQHFMGQQALYPRDMSEEEREEAEYLRTLREALRQQVAELAFQLGDRAR
QIKEGILLQLDLLCEELPEHCDNLPQCNWTEGKHGQRSCVQTHAVAPDPTLPASSGQWTPCSGMTQPVAL
SPSHLETRGGISLQSPARAESGPGPSLSHVGEKSLLDQSGFDDLCTKCNVQEQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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