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Report for CCDS20371.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20371.2 Public Mus musculus 6 Fgd5 23 108 98 CCDS HistoryNCBI Gene:232237Re-query CCDS DB by CCDS ID:20371.2See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20371.1
The coding region has been updated to add an exon at the 5' end, which extends the N-terminus of the protein. The update is supported by available transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20371.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089334.8 ENSMUSP00000086748.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089334.8Link to Ensembl Protein Viewer:ENSMUSP00000086748.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089334Re-query CCDS DB by Protein ID:ENSMUSP00000086748
Original member Current member NCBI NM_172731.3 NP_766319.3 Accepted alive Link to Nucleotide Sequence:NM_172731.3Link to Protein Sequence:NP_766319.3Re-query CCDS DB by Nucleotide ID:NM_172731Re-query CCDS DB by Protein ID:NP_766319Link to BLAST:NP_766319.3

Chromosomal Locations for CCDS 20371.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 91979030 91979042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91986801 91989465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92024504 92024633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92038025 92038083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92038187 92038217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92050006 92050166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92050390 92050549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92051080 92051167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92053227 92053277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92053811 92053869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92061804 92061875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92062836 92062904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92065148 92065231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92066183 92066262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92067502 92067601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92067885 92068022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92068448 92068577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92069368 92069501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92071312 92071440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92074098 92074252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92074570 92074606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4545 nt):
ATGCACAGAGCAGATTCACCAAAGCCACCACTTGCTCCCAAGCCAAAGGTTGCTACCAACCCTTATGCAC
CGGCAGCCAAGTTTCCCCCTTCACAGAGGCCTGACAGCTTCCCCAGTCCCAACTCCATGTCCAGGGGCCC
CAAGCCCCCTATCGCTCCTAAGCCCAGACTGACTGGCCCCAGTGAGTACCTGAACAACAGCCTCGGCAAA
TGCAGCAATGGGAGGCTGCTCTGTGAGGACCGGGGCCTGTACGACGGACACCACTCCACCCTGAATTGCT
TGGAGTTGGAGCCTGATGAGCAGTATATCATGGTTCCCAGGGCTCCACAGAAAGAAGATACTCCCGTGGA
TGGGGCTACCGAGGAGCCGGGGTTTGAGGGGGAAGTCCAGGAGCATGGTACAGAGCAGACAGGAACTGAG
GGGGACCTGGAAGCTCCAGATGAAGAGGCACCAAGTAGAGACAGTGAGGAAGGCATGGTCCACGCTCTGG
AAGATGAAGACTGTGATCACGATCCAGAGACGGATGGGACCCCAACATCGCCAGATGAAGGGGCACCAAG
CAGAGACAGTGAGGAAGGTGAGGAGGACTGTGATCAGGGCCCAGGTATGGAGGAGCATCCCATGAGTGAA
GAGGAGGGAGAAGAGGAGGAGGTGAAGGAGCACGTGTACAACAGTGATAACAGGGCACCCTGGGATGGAG
AGGAGCCCTTCCCCAATGAGGTCATTCTCACACATGTCCGCTCTCAGTCCCCTGAAGTTCCCTGTTGGGA
GCCAGGCCCTCCTGAGACTCCTGGAGAGGCAGAAGAGGATTGTGAAGACATCTGTAACAACACAGAACCT
GGGAAACCCAATCAGGACACTGGTCAGGACACAGAGGATGCCGGCATGGGATCCCCTGAGAGTGAGGTGT
CCCCAGATGTCCAGGAGCAAGAGGCAGCAACGGACAACCCTGAGGTCTTTGAGGAGGACTCTGCAGATGC
TGCAGAAGGTGAGGATCAGATAGAGCAGGAGGAACCACCCAATTGTGACGAGGAAGCCTATAATAGAGAT
GCCGCAGCAGCCACCATGCAGGTGGGAGAGGACCTCGGAGAGGAGGGAGACCATGTGCAGGAGGACCCTG
CTGAGGAAAGCTGCCAGATCATTCCCTTTGAGAGCGACAGTGTGGAGGAGGATTTCTCACCTACACTCAC
AGAGAATCCCTATGAGATTTTCCCAACCGAGAGCACTTCCTTCTGCAATAACACCTATTCCCTTGACGAG
TCAGCCAATGGGCACGAGCCAGTGTGCGAGATCTGTGTAGAGGAGGTTCCTGGTGTTGGCCCTCCACTTA
ACCAGCATGATTCCCTGCCAGATGGATCTGGAGAGGACTCCCCGGTGGTCCCTGATGTGGTGGTCGTGCC
AGAGAATGAGGGGCCCGTGGATGATGCACTCAGCAGTCCATACGTGATGGGAGTTGGCTTGCTGAGCCTT
GGAGAGGGAGCGCAGTCAGACACCCAGGCTGCATCAGGCACTCTGAGTGGGTACAGTACATGGGAGGAAG
GGGACTCTGAGGGAGGGCAGGTCCCAGTGGATAGGAAGAATATTGCCACAAGGGCCCGGCCTCACTCTGG
GAAGGTGGCTGGTCATGTTCCAGAAACTGTTCTAGAAGAAACGGGACCAGAAACCTGTTCATCAGGCATG
GGCATCAGAGATACCAGTGATGAAGTGAGGAAGATAGGTATATTGCCAGAGGGAAAGCCTCCCGAGTGTG
TTCGGGCCTTGCCGGCCAAGCCCAGAGCATTTACTCTCTACCCAAGGTCCTTCTCTGTAGAAGGCCGGGA
GAGTCCCCTGTCCATGTTCCGGGAGCCAGAGGGAGCCGGGCTGGACAGCCACCGTGTAAGGAGGAAAGAG
GACAACCTCTCTCTGCCGGGCGCCATCGGCTCCTCCGGTAGCTTCTCACAGCGCAGCCACCTGCCTTCCA
GTGGCACCTCCACACCATCCTCTGTGGTTGACATCCCACCCCCTTTTGACTTGGCCTGCATCACGAAGAA
ACCCATCACTAAAAGCTCACCCTCACTCCTGATAGACGGAGACACCCTGGAAAAAGCCTCTAAGAAGAAG
AAGTCCTCCTTCAAACGCTTCCTGGAGCTGACGTTCAGGAAGAAGACAGAGAGCAAGGTGCACGTGGACA
TGAACCTGTCGTCTTCCAGGTCTTCCTCTGAGTCCAGCTACCATGGTCCAGCCAGGGTACTGGAACTTGA
CCGCAGAAGCCTCAGCAACTCGCCCCAGCTCAAGTGTCGCACTGGAAAGCTCCGGGCCTCTGACTCCCCG
GCCGCCCTCATCTTCTACAGGGACAGCAAGAGGAAAGGCGTCCCCTTCAGCAGGACGGTGTCCAGAGTGG
AGTCCTTCGAAGACCGCTCCCGGCCGCCCTTTCTGCCTCTGCCCCTCACCAAGCCACGGTCCATCTCATT
CCCCAATGCCGACACTTCGGACTATGAGAACATTCCAGCCATGAACTCAGACTATGAGAATATCCAGATC
CCCCCTCGCAGGCCGGTGAGGACTGGCACTTTCACAAAGCTGTTCGAAGAACAGAGCCGAGCCCTGTCCA
CCGCAAATGAAAATGACGGCTACGTGGACATGAGCAGCTTCAATGCCTTCGAGAGCAAGCAGCAGAGTTC
AGAGCAGGAAGCTGAGAGCGCCTACACTGAGCCCTACAAGGTCTGTCCCATCTCAGCGGCTCCCAGAGAG
GACCTCACATCAGACGAAGAACAAGGAAGCTCCGAGGAGGAGGACAGTGCTTCAAGAGACCCCAGCCTCT
CACACAAGGGTGAAGGACAGTCTAGAGCCCTTGTCATCGCTCAGGAGCTGCTGTCTTCAGAGAAAGCATA
TGTGCAGATGTTGCAGCACTTAAGCCTGGATTTCCATGGAGCCGTCCTGAGGGCCTTGGAGAACGTAGAG
CAAGAGGGCAGAGAGCCACTGGCCCAGGAGGAGCTGCGGCAGGGCCTGCGGGAGCTCCCAGCTATCTGTG
ACCTTCACCAGGGCATCCTGGAGAGCCTGGAGCAGAGGCTGGGGGATTGTGGGGAGGGCCAGCCGCAGGT
GGCCGACATCTTCCTGGCCCAGGAACAGGAGTTCGAGCATCATGCCGCACACATCCTGCAATTTGACAGG
TACCTGGGGCTGCTCGCTGAGAGCTGCCTGCTCTCACCCCGGCTAGCCACCACGGTCCGGGAGTTTGAGC
AGAGTTCACAAGGGGGTGGCCAGAGCATGAAGCATCGTATGCTGCGTGTGGTCCAGCGCCTCTTCCAGTA
CCAAGTGCTGCTCACTGATTATTTAAATAACCTGTGCCCGGACTCAGCAGAGTACGACAACACTCAGAGT
GCTCTGACTCTCATCTCTAAAGTGACAGACCGTGCCAACGAAAGCATGGAACAGGGGGAAAACCTGCAGA
AGCTGGTCCACATCGAGTACAGTGTACGAGGCCAAGGGGACCTCCTCCAGCCAGGAAGGGAGTTCCTGAA
GGAAGGGACACTGATGAGGGTGAGAGGGAAAAGCCGACACCCCCGCCACCTGTTCCTGATGAATGACACA
CTCCTGTACACACATCCCCAGAAGGATGGGAAGTACCGGCTGAAGAGCTCGCTGCCAGTGGCCAACATGA
AGGTCAGCCGCCCTGTGATGGACAAAGTGCCCTATGCTCTGAAGATCGAAACTCCTGAGTCTTGTCTGAC
ACTGTCTGCAAGCTCCTGCGCGGAGCGGGACGAGTGGCACTACTGTCTGAGCAGAGCCCTTCCGGAGGAT
TACAAGACTCAGGCCCTGGCTGCCTTCCACCACAGTGTGGAGATCCGGGAAAGGCTGGGGATCAGCCTCG
GTGAGAGGCTCCCCACCCTGGTGCCTGTCACTCATGCCATGATGTGCATGAACTGCGGCTGTGACTTCTC
CCTCACCGTGAGGCGCCACCACTGCCATGCCTGCGGCAAGATTGTGTGCCGGAACTGCTCTCGAAACAAG
TACCCATTGAAGTGCCTCAAGAACAGGATGGCCAAGGTCTGTGATGGCTGCTTCCGGGAGCTGAAGTTGA
GGAATGGGCCTGTCCCAGGCTCCATGAGAGAGCGTCCAGTCAGCATGAGCTTCCCACTGTCCTCGTCCCG
CTTTTCCTCGGGCAGCGCCTTGTCCTCTGTCTTCCAGAGTATTAGCCCCTCAACTTTCAAGAAGCAGAAA
AAAGTCCCTTCGGCTCTGTCCGAGGTGGCCGCGTCAGGAGAGGGCTCTGCCATCAGCGGCTACTTGAGCC
GCTGTAAGAGTGGCAAGCGGCGCTGGAAGAAACTCTGGCTCGTCATCAAGGGCAAAGTACTCTACACCTA
CTTGGCCAGCGAGGACAAAGTGGCCATGGAGAGCATACCTCTGCTGGGTTTTACTATTGCCCCAGAAAAG
GAGGAGGGCAGCAGCGAAGTGGGCCCTGTTTTTCATCTTTATCACAAGAAAACCCTGTTTTACAGCTTCA
AAGCAGAGGACAGCAATTCTGCTCAGAGATGGATGGAGGCCATGGAAGATGCCAGTGTGTTATAG

Translation (1514 aa):
MHRADSPKPPLAPKPKVATNPYAPAAKFPPSQRPDSFPSPNSMSRGPKPPIAPKPRLTGPSEYLNNSLGK
CSNGRLLCEDRGLYDGHHSTLNCLELEPDEQYIMVPRAPQKEDTPVDGATEEPGFEGEVQEHGTEQTGTE
GDLEAPDEEAPSRDSEEGMVHALEDEDCDHDPETDGTPTSPDEGAPSRDSEEGEEDCDQGPGMEEHPMSE
EEGEEEEVKEHVYNSDNRAPWDGEEPFPNEVILTHVRSQSPEVPCWEPGPPETPGEAEEDCEDICNNTEP
GKPNQDTGQDTEDAGMGSPESEVSPDVQEQEAATDNPEVFEEDSADAAEGEDQIEQEEPPNCDEEAYNRD
AAAATMQVGEDLGEEGDHVQEDPAEESCQIIPFESDSVEEDFSPTLTENPYEIFPTESTSFCNNTYSLDE
SANGHEPVCEICVEEVPGVGPPLNQHDSLPDGSGEDSPVVPDVVVVPENEGPVDDALSSPYVMGVGLLSL
GEGAQSDTQAASGTLSGYSTWEEGDSEGGQVPVDRKNIATRARPHSGKVAGHVPETVLEETGPETCSSGM
GIRDTSDEVRKIGILPEGKPPECVRALPAKPRAFTLYPRSFSVEGRESPLSMFREPEGAGLDSHRVRRKE
DNLSLPGAIGSSGSFSQRSHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLIDGDTLEKASKKK
KSSFKRFLELTFRKKTESKVHVDMNLSSSRSSSESSYHGPARVLELDRRSLSNSPQLKCRTGKLRASDSP
AALIFYRDSKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQI
PPRRPVRTGTFTKLFEEQSRALSTANENDGYVDMSSFNAFESKQQSSEQEAESAYTEPYKVCPISAAPRE
DLTSDEEQGSSEEEDSASRDPSLSHKGEGQSRALVIAQELLSSEKAYVQMLQHLSLDFHGAVLRALENVE
QEGREPLAQEELRQGLRELPAICDLHQGILESLEQRLGDCGEGQPQVADIFLAQEQEFEHHAAHILQFDR
YLGLLAESCLLSPRLATTVREFEQSSQGGGQSMKHRMLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQS
ALTLISKVTDRANESMEQGENLQKLVHIEYSVRGQGDLLQPGREFLKEGTLMRVRGKSRHPRHLFLMNDT
LLYTHPQKDGKYRLKSSLPVANMKVSRPVMDKVPYALKIETPESCLTLSASSCAERDEWHYCLSRALPED
YKTQALAAFHHSVEIRERLGISLGERLPTLVPVTHAMMCMNCGCDFSLTVRRHHCHACGKIVCRNCSRNK
YPLKCLKNRMAKVCDGCFRELKLRNGPVPGSMRERPVSMSFPLSSSRFSSGSALSSVFQSISPSTFKKQK
KVPSALSEVAASGEGSAISGYLSRCKSGKRRWKKLWLVIKGKVLYTYLASEDKVAMESIPLLGFTIAPEK
EEGSSEVGPVFHLYHKKTLFYSFKAEDSNSAQRWMEAMEDASVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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