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Report for CCDS52174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52174.1 Public Mus musculus 7 Zfp790 23 108 98 CCDS HistoryNCBI Gene:233056Re-query CCDS DB by CCDS ID:52174.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032796.13 ENSMUSP00000032796.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032796.13Link to Ensembl Protein Viewer:ENSMUSP00000032796.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032796Re-query CCDS DB by Protein ID:ENSMUSP00000032796
Original member Current member EBI ENSMUST00000178162.2 ENSMUSP00000136932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178162.2Link to Ensembl Protein Viewer:ENSMUSP00000136932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178162Re-query CCDS DB by Protein ID:ENSMUSP00000136932
Original member Current member NCBI NM_001145880.1 NP_001139352.1 Accepted alive Link to Nucleotide Sequence:NM_001145880.1Link to Protein Sequence:NP_001139352.1Re-query CCDS DB by Nucleotide ID:NM_001145880Re-query CCDS DB by Protein ID:NP_001139352Link to BLAST:NP_001139352.1
Original member Current member NCBI NM_146185.2 NP_666297.2 Accepted alive Link to Nucleotide Sequence:NM_146185.2Link to Protein Sequence:NP_666297.2Re-query CCDS DB by Nucleotide ID:NM_146185Re-query CCDS DB by Protein ID:NP_666297Link to BLAST:NP_666297.2

Chromosomal Locations for CCDS 52174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29823136 29823144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29824830 29824953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29825692 29825787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29828121 29830231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGCCCACGTAATGACATTCAGAGATGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCC
TGGACCAGAAGAGTTTATACCGAGATGTCATGCTGGAGAACTACAGCCACCTTGTCTCAGTGGGGCTTTG
CATTTATCAACCGCATGGGTTCCCTGTGCCAGAGAAAGAGCAAGATGCCTGCATGGATTTGGGCAATGAG
CCTAGCAGATTTTGCCCAGATACAGATTCCCGGTGGCAGATGAAGAAAGCCCTACGGACAAACAGCACGT
GCGCAACTCGGTTGTCCCACTGGGAGGGAATGGGAATGGAGCCAAAGCACGGGCTTGCAGCCTCGTGTCC
TGCAGCCGACTGGGAAGGCAAAGGTCAGGAGCCACCACAAAGTGAGAATCAAGAGGAAACGCTCCAGCAA
ATGACACTCGCTTGTGACAAACTGCCCCTTCTGAATCTGCTCACAGCTCTTCAGTGTCCAAGACTGAAGC
TAGCAGAGAAAACAAAGGAAGTCAAATCGGAAAAATCCTTTAGTTTTGCACCAGAGCCCGCTCAACTTCA
GCTCATTCACACAGGTGAGAAATTTGAGGAAGATAAAAAACGCGGAAAGACCTTCCCTCCTGGCCCTAAG
CTTACTCGCTACCGAGCAGTTCAGGATGGCAAGAAGGCATTTCAGTGTGACGAGTGTGGCAAGGCTTTCA
GCTTCCGTTCTAGCCTCACTGGTCACAAGAGAATTCATACTGGGGAGAAGCCGTTCACGTGTAAGGAGTG
TGGGAAGGCCTTCAGATTCCACTCACTGCTCAGTGTCCACGTTCGGACTCACACTGGCGAGAAGTCTTAC
GAGTGTAAGGCATGTGGAAAGTTCTTTAACTACAGCTCAGACCTGACTCGACATCACCGGATCCACACGG
GAGAAAAGCCCTATCAGTGTAGGGAATGTGGGAAAGCCTTCAGCTGTGGCTCAGACCTGACTCGGCACGA
GAGGATCCACACTGGCGAGAAGCCCTACGAGTGTAATGAGTGTGGAAAGGCCTTTATCCAGCAGTCACAT
CTCATTAAACATCAGAGAATCCACACAGGTGAAAAACCTTACGTATGCAAGGAGTGTGGGAAAGCCTTCA
CGTGCGGGTCACAATTAAGTCAACATAGGAAGATCCATACTGGCGATAAATTGCATAAATGTAAAGAATG
TAAAAACTCCTTTAGTTTCGCCCTAGATCATACCCAGAGGCAGTTAATTTACATTGGTGAGAAGTTCTTT
GAAGATAAGGAGAACGGGGAGACCTTCTTTCCAGGCGCAGAGTTTCCGCAGTGTGAGACAGTTCACACCG
GTAAGAAGCTGTACGAGTGTAAAGAGTGTGGCAAGGCTTTTAGTCTGCGCTCCATCGTTAGTAGTCTTAA
AAAAATTCATAACAGGGAAAAGCTTTTTAAATGTAAGGACTGTGAAAAGGCCTTCCGTTGCCCCTCAGAC
CTCTCTCGACATCAGAAGATTCACACGGGCGAGAAGCCCTACAAGTGTAAGGAATGTGGGAAGGGCTTTA
TTTGCCGATCCGACCTGGGCCGGCATCAGAGAGTTCACACTGGTGTGAAGCCGTACGTGTGTAAGGAGTG
TGGGAAAGCTTTCACTCGAGGGGCACACCTGACTCAGCATCAGAAAATTCATAGTAAGAAATCACACGAA
TTCAATGAAGGAGAGAAGGCCTTTAGTTCTGGTTTAGAAAACACTCCGCACTCCTTGATCCCTACGGGCG
AGAAACTCTGGGAACGTAAGGAATACGGAGAGGCCGTCCTTCATGACCCAGAGCGGACTCAACTCCAGGC
TGCTAAGACAACGTATGACTGTAAGGAGAAGGGCAAGGACTTTAGCTGGCATTCACATGATACAGACCTC
AAGGCAGTTCATATTCGGGAGAAACGTTTTCAATGCAAGGAATGCCCAAAGGCCTTTAGATACAGCTCAG
AACTGACCCGACATCAGAGACTCCATACTGGAGAAAAGCCGTATAAATGTCAGGAGTGCTGGAAGGCCTT
TGCTTCTGCGTCAGACCTGGCCCGGCACCAGAGGATTCACACTGGTGAGCGGCCCTACGAGTGCAATGAG
TGTGGGAAAGCCTTTATTCAACAGTCACACCTCATTAAACATCAGAGAGTTCACAGTGCCGAGCAGCCCA
AGGATGTGATGAGCGCAGAGAAGCCATCGCTTGGCAGTCCGATGCTATTGAACATGAGAGAGTTCACACT
GGTCAACAATCTTATAAATTTAAGGAGTGTTGGAAAGATTCTGCTCATGGCTCAGCTCAATCCGTGTCAG
AAGATTTATACTGATAAGAAATTAAGTTAA

Translation (779 aa):
MAHVMTFRDVAVDFSPEEWECLSLDQKSLYRDVMLENYSHLVSVGLCIYQPHGFPVPEKEQDACMDLGNE
PSRFCPDTDSRWQMKKALRTNSTCATRLSHWEGMGMEPKHGLAASCPAADWEGKGQEPPQSENQEETLQQ
MTLACDKLPLLNLLTALQCPRLKLAEKTKEVKSEKSFSFAPEPAQLQLIHTGEKFEEDKKRGKTFPPGPK
LTRYRAVQDGKKAFQCDECGKAFSFRSSLTGHKRIHTGEKPFTCKECGKAFRFHSLLSVHVRTHTGEKSY
ECKACGKFFNYSSDLTRHHRIHTGEKPYQCRECGKAFSCGSDLTRHERIHTGEKPYECNECGKAFIQQSH
LIKHQRIHTGEKPYVCKECGKAFTCGSQLSQHRKIHTGDKLHKCKECKNSFSFALDHTQRQLIYIGEKFF
EDKENGETFFPGAEFPQCETVHTGKKLYECKECGKAFSLRSIVSSLKKIHNREKLFKCKDCEKAFRCPSD
LSRHQKIHTGEKPYKCKECGKGFICRSDLGRHQRVHTGVKPYVCKECGKAFTRGAHLTQHQKIHSKKSHE
FNEGEKAFSSGLENTPHSLIPTGEKLWERKEYGEAVLHDPERTQLQAAKTTYDCKEKGKDFSWHSHDTDL
KAVHIREKRFQCKECPKAFRYSSELTRHQRLHTGEKPYKCQECWKAFASASDLARHQRIHTGERPYECNE
CGKAFIQQSHLIKHQRVHSAEQPKDVMSAEKPSLGSPMLLNMREFTLVNNLINLRSVGKILLMAQLNPCQ
KIYTDKKLS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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