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Report for CCDS21111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21111.1 Public Mus musculus 7 Ffar2 23 108 98 CCDS HistoryNCBI Gene:233079Re-query CCDS DB by CCDS ID:21111.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053156.9 ENSMUSP00000052600.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053156.9Link to Ensembl Protein Viewer:ENSMUSP00000052600.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053156Re-query CCDS DB by Protein ID:ENSMUSP00000052600
Original member Current member EBI ENSMUST00000163504.7 ENSMUSP00000127758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163504.7Link to Ensembl Protein Viewer:ENSMUSP00000127758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163504Re-query CCDS DB by Protein ID:ENSMUSP00000127758
Original member Current member EBI ENSMUST00000168528.7 ENSMUSP00000129398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168528.7Link to Ensembl Protein Viewer:ENSMUSP00000129398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168528Re-query CCDS DB by Protein ID:ENSMUSP00000129398
Original member Current member NCBI NM_001168509.1 NP_001161981.1 Accepted alive Link to Nucleotide Sequence:NM_001168509.1Link to Protein Sequence:NP_001161981.1Re-query CCDS DB by Nucleotide ID:NM_001168509Re-query CCDS DB by Protein ID:NP_001161981Link to BLAST:NP_001161981.1
Original member Current member NCBI NM_001168510.1 NP_001161982.1 Accepted alive Link to Nucleotide Sequence:NM_001168510.1Link to Protein Sequence:NP_001161982.1Re-query CCDS DB by Nucleotide ID:NM_001168510Re-query CCDS DB by Protein ID:NP_001161982Link to BLAST:NP_001161982.1
Original member Current member NCBI NM_001168511.1 NP_001161983.1 Accepted alive Link to Nucleotide Sequence:NM_001168511.1Link to Protein Sequence:NP_001161983.1Re-query CCDS DB by Nucleotide ID:NM_001168511Re-query CCDS DB by Protein ID:NP_001161983Link to BLAST:NP_001161983.1
Original member Current member NCBI NM_001168512.1 NP_001161984.1 Accepted alive Link to Nucleotide Sequence:NM_001168512.1Link to Protein Sequence:NP_001161984.1Re-query CCDS DB by Nucleotide ID:NM_001168512Re-query CCDS DB by Protein ID:NP_001161984Link to BLAST:NP_001161984.1
Original member Current member NCBI NM_146187.4 NP_666299.1 Accepted alive Link to Nucleotide Sequence:NM_146187.4Link to Protein Sequence:NP_666299.1Re-query CCDS DB by Nucleotide ID:NM_146187Re-query CCDS DB by Protein ID:NP_666299Link to BLAST:NP_666299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161981.1 330 Q8VCK6 330 100% 0 0
NP_001161982.1 330 Q8VCK6 330 100% 0 0
NP_001161983.1 330 Q8VCK6 330 100% 0 0
NP_001161984.1 330 Q8VCK6 330 100% 0 0
NP_666299.1 330 Q8VCK6 330 100% 0 0

Chromosomal Locations for CCDS 21111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30819121 30820113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGACCCCAGACTGGCACAGTTCCTTGATCCTCACGGCCTACATCCTCATCTTTCTTACTGGGCTCCCTG
CCAACCTGCTGGCCCTGCGGGCCTTCATGGGCCGGGTTCGCCAGCCTCAGCCTGCCCCTGTGCACATCCT
CCTGCTTAATCTGACCCTGGCGGACTTGCTCCTGTTGCTGCTGCTGCCCTTCCGGATCGTGGAAGCAGCA
TCCAACTTCCGCTGGTACCTACCAAAGATCGTGTGCGCGCTGACAGGCTTCGGCTTCTACAGCAGCATCT
ACTGCAGCACGTGGCTGCTGGCGGGCATCAGCATGGAACGCTACCTGGGAGTGGCCTTCCCGGTGCAGTA
CAAGTTATCCCGCCGGCCACTGTATGGAGTGATCGCTGCTCTGGTGGCCTGGATCATGTCCTTTGGCCAC
TGCACCATCGTCATCATCGTTCAGTACCTGAACTCAACTGAGCAGGTGGGCACTGAGAACCAAATAACCT
GCTACGAGAACTTCACCCAAGAGCAGCTGGATGTGGTACTGCCCGTACGACTGGAGCTGTGCCTGGTCCT
GTTTTTCGTTCCCATGGCAGTCACCATCTTCTGTTATTGGCGCTTCGTGTGGATCATGCTCACGCAGCCC
CACGTTGGGGCTCAGAGGCGACGCCGGGCAGTGGGCCTGGCTGTTGTGACGCTTCTTAATTTCCTGGTGT
GCTTTGGACCCTACAACATGTCCCACCTGGTGGGGTTCTACCTGAGGCAGAGCCCCTCGTGGCGGGTGGA
GGCTGTGGTGTTCAGTTCCCTCAATGCCAGCCTGGATCCATTATTGTTCTACTTCTCCTCCTCCGTGGTG
CGCAGAGCTTTTGGGAAAGGTTTGCTACTGATCCGCAATCCTGCCTCCTCTATGCTGGGCAGGGGAGCCA
AAGAGACAGTGGAGGGGACCAAGATGGACAGGGGTGGAAGTCAAGCAGAAGGGGTACAGAGTTCTGAATT
TGTCACCGAGTAG

Translation (330 aa):
MTPDWHSSLILTAYILIFLTGLPANLLALRAFMGRVRQPQPAPVHILLLNLTLADLLLLLLLPFRIVEAA
SNFRWYLPKIVCALTGFGFYSSIYCSTWLLAGISMERYLGVAFPVQYKLSRRPLYGVIAALVAWIMSFGH
CTIVIIVQYLNSTEQVGTENQITCYENFTQEQLDVVLPVRLELCLVLFFVPMAVTIFCYWRFVWIMLTQP
HVGAQRRRRAVGLAVVTLLNFLVCFGPYNMSHLVGFYLRQSPSWRVEAVVFSSLNASLDPLLFYFSSSVV
RRAFGKGLLLIRNPASSMLGRGAKETVEGTKMDRGGSQAEGVQSSEFVTE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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