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Report for CCDS52594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52594.1 Public Mus musculus 8 Cib3 23 108 98 CCDS HistoryNCBI Gene:234421Re-query CCDS DB by CCDS ID:52594.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098630.4 ENSMUSP00000096231.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098630.4Link to Ensembl Protein Viewer:ENSMUSP00000096231.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098630Re-query CCDS DB by Protein ID:ENSMUSP00000096231
Original member NCBI NM_001080812.1 NP_001074281.1 Updated not alive Link to Nucleotide Sequence:NM_001080812.1Link to Protein Sequence:NP_001074281.1Re-query CCDS DB by Nucleotide ID:NM_001080812Re-query CCDS DB by Protein ID:NP_001074281
Current member NCBI NM_001080812.2 NP_001074281.1 Accepted alive Link to Nucleotide Sequence:NM_001080812.2Link to Protein Sequence:NP_001074281.1Re-query CCDS DB by Nucleotide ID:NM_001080812Re-query CCDS DB by Protein ID:NP_001074281Link to BLAST:NP_001074281.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074281.1 160 Q0P523 160 100% 0 0

Chromosomal Locations for CCDS 52594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72204409 72204430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72205563 72205758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72207127 72207274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72210373 72210484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72212744 72212748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGAGGCTGTTCTATCGATACCAGGACCTGGCCCCTCAGTTGGTGCCTCTTGACTACACGACCAGTCCCA
AGGTGAAGGTGCCCTATGAACTGATTGGCAGCATGCCAGAGCTGAAGGATAACCCTTTCCGCCAGAGAAT
TGCGCAGGTCTTCTCGCAAGATGGGGATGGTCACATGACCTTAGAGAATTTCTTGGATATGTTCTCAGTG
ATGAGTGAGATGGCTCCACGGGACCTGAAGGCCTACTATGCCTTCAAGATTTATGACTTCAACAATGACA
ACTACATCTGTGCATGGGACCTGGAGCAGACCGTGACCAGGCTGACTCGTGGGGAACTGAGTGCTGAGGA
AGTGACCCTGGTCTGTGAGAAGGTGCTGGATGAAGCAGATGGAGACCAAGACGGGCGACTGTCCCTGGAG
GACTTCCAAAATATGATCCTGCGAGCTCCAGACTTCCTCAGCACCTTCCACATCCGCATCTGA

Translation (160 aa):
MRLFYRYQDLAPQLVPLDYTTSPKVKVPYELIGSMPELKDNPFRQRIAQVFSQDGDGHMTLENFLDMFSV
MSEMAPRDLKAYYAFKIYDFNNDNYICAWDLEQTVTRLTRGELSAEEVTLVCEKVLDEADGDQDGRLSLE
DFQNMILRAPDFLSTFHIRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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