NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22508.1 Public Mus musculus 8 Heatr3 23 108 98 CCDS HistoryNCBI Gene:234549Re-query CCDS DB by CCDS ID:22508.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034079.13 ENSMUSP00000034079.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034079.13Link to Ensembl Protein Viewer:ENSMUSP00000034079.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034079Re-query CCDS DB by Protein ID:ENSMUSP00000034079
Original member Current member NCBI NM_172757.3 NP_766345.3 Accepted alive Link to Nucleotide Sequence:NM_172757.3Link to Protein Sequence:NP_766345.3Re-query CCDS DB by Nucleotide ID:NM_172757Re-query CCDS DB by Protein ID:NP_766345Link to BLAST:NP_766345.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766345.3 679 Q8BQM4 679 100% 0 0

Chromosomal Locations for CCDS 22508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 88138020 88138157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88138275 88138447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88139892 88139979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88141672 88141781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88144529 88144638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88147547 88147687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88150092 88150369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88156462 88156552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88156670 88156827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88157053 88157135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88158129 88158265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88161878 88161966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88164888 88165031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88166996 88167172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88170859 88170981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGGGTAAGAGTCGGACGAAGCGCTTCAAGCGACCTCAGTTCTCCCCTATCGAGAGCTGTCAGGCCGAGG
CGGCGGCCGCGTCGAACGGGACTGGGGACGAGGAGGACGATGGGCCCGCGGCGGAGCTTCTGGAGAAGCT
CCAGCACCCGAGCGCCGAGGTCCGCGAGTGCGCCTGCGCGGGACTGGCCCGGCTAGTGCAGCAGCGGCCC
GCACTACCAGACTTAGCCCGTCGGGATGCTGTGCGCCGGCTCGGGCCGCTGCTGCTGGACTCGAGTCTGG
CGGTAAGGGAGACGGCGGCCGGAGCTCTGAGAAACCTCAGTGCTTGTGGAGGTTTTGACGTTTGTGATGA
CATGGTGGCAAAGGACATCATGACGCCCCTGGTGGCACTACTGAGAGAGTGTCTCTCTGGACTGGATTCA
AATGAGATGTCTCCACAGGAGAAAGCTGATAAGAGAAATCCTGTAGAGAGCATAGCCAATGAGGCTGTGA
ATGTGCTGTGGAATGTGTGTGAATGCAGTGGCAGAGCAGTGTCTATATTCAACAAAGAAGGGTGTTTGGA
GATTGTGTTACAGTACTTACGTAGGTTCCCCACCAGTATTGACCTGGCTGTCTCCGTAGCGTATTGTTTA
CAGACAGTGACGGAAGATAACCCAGAGCTCCTGAAATCTTTTGATGGCACAGCACTACGTGTGCTGGAGT
CTGCTTTGCTTTGTCCTGTCGCCTCTATGGAATACATTCTTTTAAAGACACTGGTGGCAGGCACCATCTG
GAACCTAAAGGACATTATTCCATCTAAGAGTCAGGCAGAAATCATTAATGCCATCCTAGGTGCCTTGTCT
GAAGTTCTGGGTATGAATACTGGCAACATGGTCATTCAGATGAAGGAAGCTGAAACCCAGCGGCTAAAGA
CTGCCGCAGAGAGTGAGGACATCCTAGCAAATGCTAACGGTGATGACTTGGTTGAAGATGATGAAATGGA
AGAAATCCCTCATAAAAGAAAACTCAGAAGGAAAACATTTATTTCCGATTTACTTCCACCTACTGACAAG
GAGCTGCGAGAGGCCATGGCGTTGCTGACAGCTCAGCAGACTGCTCTGGAAGTTATTGTCAACATGTGCT
GCAGTGAAGATCCCTCGGATGATGAGTGGGAAGAACTGTCTAGTAGTGATGAAAGTGAAGCCTTTATGGA
AAACTCCTTCAGTGAGTGCAGTGGGCACCTGATGTCCCCATTGTGCCTGTCCCACGAGATTCACTCTGCC
CTTACCAACTGCCTCATTCCAGAGAAGGTTTTTGAGAAAACATCTTCACCAAACAGTGTTGCAGTTGACA
TATGTTCTAAGAACCCTACTTGGAAACCTTTGATTAGGAAAATGAACACTATTCAGTGTAGAGCCCTTAT
GTGTCTCCAGAGTCTTGTGTCTCTCCTGGACATAGACCATCTCGGTGGAGCCCCTGCTCTCCAGACTCTT
GCTCAGCACCTGTCACAGATTCTTTTTTCTCAGCCAGATTTTGCTAAACATGATGATTTTCTAGAAGCCA
TAAGTAGTGCTTTGAGGGCCCTTTTGCAAACAATGGCCTCCAAGAACATTCCACAGTGTATGACCCCTGA
GCAGCTGATGACGCTGTGCAGAGAAGGCATTCATAGCAGTAGCATTGGGGTTCGAGTGAATGTGGTCAGT
ATTTTGGGGATCACTGGGAGCGTCCTAGCCAAAGACGACGGCACACTTGACACTCTGAAGACCATTGGGT
GCTTTCTGCTGGAAGTCGCCACCAAAGACCCTTCCCTTGTGGTAACAGGCGAGGCTCTGGATGCCCTCTT
CGATGTTTTTGCAGATGGCGAAGCAGCTGAAAAGGCTTCAGTTCAAATTAAATTGTTAGCGGCTTTGAAA
GAATTCCAACCAGTCTTCAAAATGAAGATACGGAAAGAAGGGAGGGGCAAGTACAGTCCAGACCAGCTGT
GTGTTCTCGACAATGTGAAGATGAATTTGAGACGGTTTATTGCTTACCAGGAAACTGTTGAGAAAAGACT
GACTTCTTAA

Translation (679 aa):
MGKSRTKRFKRPQFSPIESCQAEAAAASNGTGDEEDDGPAAELLEKLQHPSAEVRECACAGLARLVQQRP
ALPDLARRDAVRRLGPLLLDSSLAVRETAAGALRNLSACGGFDVCDDMVAKDIMTPLVALLRECLSGLDS
NEMSPQEKADKRNPVESIANEAVNVLWNVCECSGRAVSIFNKEGCLEIVLQYLRRFPTSIDLAVSVAYCL
QTVTEDNPELLKSFDGTALRVLESALLCPVASMEYILLKTLVAGTIWNLKDIIPSKSQAEIINAILGALS
EVLGMNTGNMVIQMKEAETQRLKTAAESEDILANANGDDLVEDDEMEEIPHKRKLRRKTFISDLLPPTDK
ELREAMALLTAQQTALEVIVNMCCSEDPSDDEWEELSSSDESEAFMENSFSECSGHLMSPLCLSHEIHSA
LTNCLIPEKVFEKTSSPNSVAVDICSKNPTWKPLIRKMNTIQCRALMCLQSLVSLLDIDHLGGAPALQTL
AQHLSQILFSQPDFAKHDDFLEAISSALRALLQTMASKNIPQCMTPEQLMTLCREGIHSSSIGVRVNVVS
ILGITGSVLAKDDGTLDTLKTIGCFLLEVATKDPSLVVTGEALDALFDVFADGEAAEKASVQIKLLAALK
EFQPVFKMKIRKEGRGKYSPDQLCVLDNVKMNLRRFIAYQETVEKRLTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH