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Report for CCDS22658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22658.1 Public Mus musculus 8 Tat 23 108 98 CCDS HistoryNCBI Gene:234724Re-query CCDS DB by CCDS ID:22658.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001720.13 ENSMUSP00000001720.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001720.13Link to Ensembl Protein Viewer:ENSMUSP00000001720.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001720Re-query CCDS DB by Protein ID:ENSMUSP00000001720
Original member Current member NCBI NM_146214.3 NP_666326.1 Accepted alive Link to Nucleotide Sequence:NM_146214.3Link to Protein Sequence:NP_666326.1Re-query CCDS DB by Nucleotide ID:NM_146214Re-query CCDS DB by Protein ID:NP_666326Link to BLAST:NP_666326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666326.1 454 Q8QZR1 454 100% 0 0

Chromosomal Locations for CCDS 22658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109991485 109991719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109991843 109991947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109992583 109992650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109993822 109993980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109994561 109994699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109995169 109995221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109996067 109996219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109996794 109996922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109997522 109997605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109998297 109998395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109998749 109998889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGACTCCTACGTAATCCAGACGAATGTCAATGACAGCCTACCTTCAGTGCTGGATGTTCGCGTCAATA
TTGGCGGGAGAAGCTCGGTGCAAGGGAGAGCGAAGGGCAGGAAGGCCAGGTGGAATGTGAGGCCCTCTGA
CATGTCCAATAAAACCTTCAATCCCATCCGAGCCATTGTGGACAACATGAAGGTGAAGCCGAATCCGAAC
AAAACCGTGATCTCTCTGTCAATTGGGGACCCTACTGTGTTTGGGAACCTGCCCACAGACCCTGAAGTGA
CCCAAGCCATGAAGGATGCCCTGGACTCCGGGAAGTACAATGGCTATGCCCCATCTATCGGCTACCTATC
CAGTCGGGAGGAGGTCGCTTCCTATTACCACTGTCCTGAGGCTCCTCTGGAAGCTAAGGATGTCATTCTG
ACGAGTGGCTGCAGTCAGGCCATTGAGCTGTGTCTAGCCGTGTTGGCCAATCCTGGACAGAACATCCTCA
TTCCGAGGCCCGGGTTTTCCCTCTACAGGACATTGGCTGAGTCTATGGGGATTGAGGTCAAGCTCTACAA
TCTATTGCCTGAGAAGTCTTGGGAAATTGATCTAAAACAACTGGAATCTCTGATCGACGAAAAAACAGCT
TGTCTCGTGGTCAACAACCCGTCCAATCCCTGTGGCTCTGTGTTCAGTAAGCGGCACCTTCAGAAGATTT
TGGCAGTGGCTGAAAGGCAATGCGTCCCCATCTTAGCCGATGAGATCTATGGTGACATGGTGTTTTCAGA
TTGCAAATATGAACCAATGGCCACCCTCAGCACCAATGTCCCCATCCTGTCCTGTGGTGGGCTGGCCAAG
CGCTGGCTGGTTCCTGGCTGGAGGCTGGGCTGGATCCTTATCCATGATCGAAGAGACATTTTTGGCAATG
AGATTCGGGACGGGCTGGTGAAGCTGAGTCAGCGGATCCTGGGCCCGTGCACCATCGTCCAAGGTGCCCT
GAAGAGCATCCTTCAGCGCACCCCTCAGGAGTTCTACCAGGACACTTTAAGCTTCCTTAAGTCCAATGCG
GACCTCTGCTATGGGGCGTTGTCTGCCATTCCTGGACTCCAGCCAGTCCGCCCATCTGGAGCCATGTACC
TTATGGTGGGAATTGAGATGGAGCACTTCCCAGAATTTGAGAATGACGTGGAATTCACAGAGCGGTTAAT
TGCGGAGCAGTCTGTCCACTGCCTCCCAGCCACGTGCTTCGAGTACCCAAATTTCTTCCGGGTTGTCATC
ACAGTCCCCGAGGTGATGATGCTGGAGGCTTGTAGCCGGATCCAGGAGTTCTGTGAACAGCACTACCACT
GTGCTGAAGGCAGCCAGGAGGAGTGTGACAAATAG

Translation (454 aa):
MDSYVIQTNVNDSLPSVLDVRVNIGGRSSVQGRAKGRKARWNVRPSDMSNKTFNPIRAIVDNMKVKPNPN
KTVISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGYLSSREEVASYYHCPEAPLEAKDVIL
TSGCSQAIELCLAVLANPGQNILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTA
CLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAK
RWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYQDTLSFLKSNA
DLCYGALSAIPGLQPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLIAEQSVHCLPATCFEYPNFFRVVI
TVPEVMMLEACSRIQEFCEQHYHCAEGSQEECDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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