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Report for CCDS22887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22887.1 Public Mus musculus 9 Ppan 23 108 98 CCDS HistoryNCBI Gene:235036Re-query CCDS DB by CCDS ID:22887.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004203.5 ENSMUSP00000004203.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004203.5Link to Ensembl Protein Viewer:ENSMUSP00000004203.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000004203Re-query CCDS DB by Protein ID:ENSMUSP00000004203
Original member Current member NCBI NM_145610.2 NP_663585.2 Accepted alive Link to Nucleotide Sequence:NM_145610.2Link to Protein Sequence:NP_663585.2Re-query CCDS DB by Nucleotide ID:NM_145610Re-query CCDS DB by Protein ID:NP_663585Link to BLAST:NP_663585.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663585.2 470 Q91YU8 470 100% 0 0

Chromosomal Locations for CCDS 22887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20888300 20888317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20888407 20888577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20889338 20889439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20889634 20889684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20889771 20889941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20890639 20890715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20890905 20891012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20891083 20891206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20891287 20891365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20891451 20891747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20891832 20892046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGGGCAGTCCGGGCGGTCCCGACATCAGAAGCGCAATCGCGCCCAGGCGCAGCTCCGCAACCTCGAGT
CCTACGCTGCACAGCCGCACTCGTTCGTGTTCACGCGAGGCCGAGCGGGTCGCAATGTCCGGCAGCTCAG
CCTGGATGTGCGGCGGGTCATGGAACCTCTCACCGCTACCCGCCTGCAGGTTCGAAAGAAGAACTCCCTG
AAGGACTGTGTGGCAGTGGCTGGCCCCCTGGGGGTCACACACTTCCTTATTTTGACCAAAACAGATAACA
GTGTATACTTGAAGCTGATGCGGCTCCCAGGAGGCCCCACTTTGACGTTCCAGATCAGCAAGTATACACT
GATACGGGACGTGGTCTCTTCCCTGCGCCGACACCGGATGCACGAGCAGCAGTTTAACCACCCTCCCCTC
CTGGTGCTCAACAGCTTCGGCCCCCAGGGCATGCACATCAAGCTCATGGCCACCATGTTCCAGAACCTGT
TCCCGTCCATCAACGTGCACACGGTGAACCTGAACACCATTAAGCGCTGCCTCCTCATTAACTACAACCC
TGACTCCCAAGAGCTGGACTTCCGACACTACAGCGTCAAAGTGGTTCCCGTGGGTGCAAGCCGCGGCATG
AAGAAGCTCTTACAGGAGAAGTTCCCTAACATGAGCCGACTGCAGGACATCAGTGAGCTGCTGGCCACGG
GTGTGGGGCTATCAGACAGTGAGGTGGAGCCAGATGGAGAACACAACACCACAGAACTGCCCCAGGCTGT
GGCCGGCCGTGGCAACATGCAGGCCCAACAGAGCGCCGTCCGACTTACTGAGATTGGGCCCCGGATGACA
CTGCAGCTCATTAAGATCCAGGAGGGCGTCGGGAACGGCAATGTCCTCTTCCACAGTTTTGTACACAAGA
CAGAGGAGGAGCTGCAGGCCATCCTGGCAGCCAAGGAGGAGAAGCTCCGGCTGAAGGCACAGCGTCAGAA
CCAACAGGCAGAGAACTTGCAGCGCAAGCAGGAGCTGCGCGAGGCCCACAAGAAGAAGAGCCTGGCAGGC
ATAAAGCGAGCCCGTGCAAGGGCCGACGGTGACAGTGATGCTGAGGACCCAGGGGCACCGCCAGAGGCAG
TGGGGGCAGGTCAGCCTGAAGATGAAGAGGATGACGCTGAGTATTTCCGCCAGGCTGTGGGGGAGGAGCC
TGACGAAGACTTGTTCCCCACAGCGGCCAAGCGGAGACGGCAGGGGGGCCCTCTGGGCAAGAAGCAGCGA
GGGAAGGAGCAGAGGCCTGGTAATAAAGGCCGAGGTCAGGGTGGCAACTGGCAGGCTCTGAAGCTACAAG
GTAGATCCCAGAGAGGCAAGGCCAAGCCGAGACCCAGAGCCACACACCAGGACTCACGCCCAGCATCAAG
GAGAAGAAACTGA

Translation (470 aa):
MGQSGRSRHQKRNRAQAQLRNLESYAAQPHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSL
KDCVAVAGPLGVTHFLILTKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPL
LVLNSFGPQGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASRGM
KKLLQEKFPNMSRLQDISELLATGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQQSAVRLTEIGPRMT
LQLIKIQEGVGNGNVLFHSFVHKTEEELQAILAAKEEKLRLKAQRQNQQAENLQRKQELREAHKKKSLAG
IKRARARADGDSDAEDPGAPPEAVGAGQPEDEEDDAEYFRQAVGEEPDEDLFPTAAKRRRQGGPLGKKQR
GKEQRPGNKGRGQGGNWQALKLQGRSQRGKAKPRPRATHQDSRPASRRRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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