NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49359.1 Public Mus musculus 13 Pde4d 23 108 98 CCDS HistoryNCBI Gene:238871Re-query CCDS DB by CCDS ID:49359.1Re-query CCDS DB by GeneID:238871See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122041.7 ENSMUSP00000113488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122041.7Link to Ensembl Protein Viewer:ENSMUSP00000113488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122041Re-query CCDS DB by Protein ID:ENSMUSP00000113488
Original member Current member EBI ENSMUST00000177907.7 ENSMUSP00000136485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177907.7Link to Ensembl Protein Viewer:ENSMUSP00000136485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177907Re-query CCDS DB by Protein ID:ENSMUSP00000136485
Original member Current member NCBI NM_011056.3 NP_035186.1 Accepted alive Link to Nucleotide Sequence:NM_011056.3Link to Protein Sequence:NP_035186.1Re-query CCDS DB by Nucleotide ID:NM_011056Re-query CCDS DB by Protein ID:NP_035186Link to BLAST:NP_035186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035186.1 747 Q01063-1 747 100% 0 0

Chromosomal Locations for CCDS 49359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 108860166 108860207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109032468 109032697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109740387 109740578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109757577 109757613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109769534 109769607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109772631 109772680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109903577 109903689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109933868 109933961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109935306 109935478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109936677 109936775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109937967 109938131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109939262 109939361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109948240 109948394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109949414 109949536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109950209 109950391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 109950931 109951344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGGAGAGGGACACTTGTGATGTACTCTCTCGGAGCAAAAGTGCCTCTGAGGAAACACTGCACTCCTGTA
ATGAAGAAGAGGACCCTTTTCGTGGAATGGAGCCCTATCTCGTACGGCGACTTTCTTCCCGCAGCATTCA
GCTTCCACCTCTGGCCTTCAGACAGTTGGAACAAGCAGACTTGCGAAGCGAATCAGAGAACATCCCTCGG
CCAACTAGCCTCCCCTTGAAAATCCTGCCTCTGATCGCCGTCACATCTGCAGACTCAAGTGGTTTCGATG
TGGACAATGGCACATCAGCGGGACGGAGTCCCTTGGATCCCATGACCAGCCCAGGGTCTGGGCTGATTCT
CCAAGCAAACTTTGTCCACAGTCAACGCCGGGAGTCCTTCCTGTACCGATCTGACAGCGACTATGACCTC
TCTCCAAAGTCTATGTCCAGGAACTCCTCGATTGCCAGTGATATACATGGAGATGACTTGATTGTGACCC
CGTTTGCTCAGGTCTTGGCTAGCCTGCGAACCGTACGGAACAACTTTGCTGCGTTAACGAATTTGCAAGA
CCGAGCACCCAGCAAAAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATCACAGAGGAG
GCCTACCAGAAACTGGCCAGCGAGACCCTGGAGGAGCTGGACTGGTGTCTGGACCAGCTAGAGACCCTGC
AGACCAGGCACTCCGTCAGTGAGATGGCCTCCAACAAGTTCAAAAGGATGCTGAACCGGGAGCTCACGCA
TCTCTCTGAGATGAGTCGGTCTGGCAACCAGGTGTCGGAGTACATCTCAAACACATTTCTCGATAAGCAA
CATGAAGTGGAAATCCCCTCTCCAACTCAGAAGGAAAAGGAGAAGAAGAAAAGGCCGATGTCGCAGATCA
GTGGGGTCAAGAAGTTGATGCACAGCTCCAGCCTAACTAATTCATGTATCCCCAGGTTTGGGGTTAAAAC
GGAGCAGGAAGATGTCCTGGCCAAGGAACTAGAAGATGTGAACAAGTGGGGCCTCCACGTTTTCCGAATA
GCAGAGCTGTCTGGTAACCGGCCTCTGACTGTTATCATGCACACCATTTTTCAGGAACGAGATTTGTTAA
AAACGTTTAAAATCCCAGTAGACACTTTGATTACGTATCTTATGACTCTGGAAGACCATTACCATGCTGA
CGTGGCCTATCACAACAACATCCATGCTGCAGACGTCGTCCAGTCCACTCACGTGCTGCTCTCTACACCC
GCTTTGGAGGCTGTGTTCACAGACTTGGAGATTCTCGCGGCCATTTTTGCCAGTGCAATACATGATGTGG
ACCATCCTGGGGTGTCAAATCAATTTCTGATCAATACAAACTCGGAACTCGCTCTGATGTACAACGACTC
CTCGGTCCTAGAGAACCATCACTTGGCGGTGGGCTTTAAGTTGCTCCAGGAAGAAAACTGTGACATTTTC
CAGAATCTGACCAAAAAGCAAAGACAATCTTTAAGGAAAATGGTCATTGACATTGTCCTGGCGACAGACA
TGTCGAAGCACATGAACCTGCTGGCTGATCTGAAAACCATGGTTGAAACCAAGAAGGTGACAAGCTCCGG
CGTCCTCCTCCTGGATAACTACTCCGACAGGATCCAGGTCCTTCAGAATATGGTGCACTGTGCAGACCTG
AGCAACCCCACAAAGCCACTCCAGCTGTACCGCCAGTGGACGGACCGGATAATGGAGGAGTTCTTCCGCC
AGGGGGACCGAGAGCGGGAGCGTGGCATGGAGATAAGTCCCATGTGTGACAAGCACAACGCCTCTGTGGA
AAAATCACAGGTGGGCTTCATAGACTATATCGTTCATCCACTCTGGGAGACGTGGGCAGACCTCGTACAT
CCCGATGCCCAGGACATCTTGGACACTTTGGAGGACAATCGTGAGTGGTACCAGAGCACAATCCCCCAGA
GCCCCTCCCCTGCACCTGATGACCAAGAGGAGGGCCGGCAGGGACAGACTGAAAAATTCCAGTTTGAACT
AACCTTGGAGGAAGACTGCGAGTCAGACACTGAAAAGGACAGTGGAAGTCAGGTGGAGGAAGACACTAGC
TGCAGTGACTCTAAGACTCTGTGCACCCAAGACTCAGAGTCCACTGAAATTCCCCTTGACGAGCAGGTTG
AGGAGGAAGCTGTAGCGGAAGAGGAAAGCCAGCCTGAAACTTGCGTCCCAGATGACTGCTGTCCTGATAC
GTAA

Translation (747 aa):
MERDTCDVLSRSKSASEETLHSCNEEEDPFRGMEPYLVRRLSSRSIQLPPLAFRQLEQADLRSESENIPR
PTSLPLKILPLIAVTSADSSGFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDL
SPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITEE
AYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQ
HEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSCIPRFGVKTEQEDVLAKELEDVNKWGLHVFRI
AELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTP
ALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIF
QNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADL
SNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVH
PDAQDILDTLEDNREWYQSTIPQSPSPAPDDQEEGRQGQTEKFQFELTLEEDCESDTEKDSGSQVEEDTS
CSDSKTLCTQDSESTEIPLDEQVEEEAVAEEESQPETCVPDDCCPDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH