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Report for CCDS13801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13801.1 Public Homo sapiens 22 PRAME 24 110 108 CCDS HistoryNCBI Gene:23532Re-query CCDS DB by CCDS ID:13801.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13801.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398741.5 ENSP00000381726.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398741.5Link to Ensembl Protein Viewer:ENSP00000381726.1Re-query CCDS DB by Nucleotide ID:ENST00000398741Re-query CCDS DB by Protein ID:ENSP00000381726
Original member Current member EBI ENST00000398743.6 ENSP00000381728.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398743.6Link to Ensembl Protein Viewer:ENSP00000381728.2Re-query CCDS DB by Nucleotide ID:ENST00000398743Re-query CCDS DB by Protein ID:ENSP00000381728
Original member Current member EBI ENST00000405655.8 ENSP00000384343.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405655.8Link to Ensembl Protein Viewer:ENSP00000384343.3Re-query CCDS DB by Nucleotide ID:ENST00000405655Re-query CCDS DB by Protein ID:ENSP00000384343
Original member Current member EBI ENST00000402697.5 ENSP00000385198.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402697.5Link to Ensembl Protein Viewer:ENSP00000385198.1Re-query CCDS DB by Nucleotide ID:ENST00000402697Re-query CCDS DB by Protein ID:ENSP00000385198
Original member Current member EBI ENST00000543184.5 ENSP00000445675.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543184.5Link to Ensembl Protein Viewer:ENSP00000445675.1Re-query CCDS DB by Nucleotide ID:ENST00000543184Re-query CCDS DB by Protein ID:ENSP00000445675
Original member Current member NCBI NM_001291715.2 NP_001278644.1 Accepted alive Link to Nucleotide Sequence:NM_001291715.2Link to Protein Sequence:NP_001278644.1Re-query CCDS DB by Nucleotide ID:NM_001291715Re-query CCDS DB by Protein ID:NP_001278644Link to BLAST:NP_001278644.1
Original member Current member NCBI NM_001291716.2 NP_001278645.1 Accepted alive Link to Nucleotide Sequence:NM_001291716.2Link to Protein Sequence:NP_001278645.1Re-query CCDS DB by Nucleotide ID:NM_001291716Re-query CCDS DB by Protein ID:NP_001278645Link to BLAST:NP_001278645.1
Original member Current member NCBI NM_006115.5 NP_006106.1 Accepted alive Link to Nucleotide Sequence:NM_006115.5Link to Protein Sequence:NP_006106.1Re-query CCDS DB by Nucleotide ID:NM_006115Re-query CCDS DB by Protein ID:NP_006106Link to BLAST:NP_006106.1
Original member Current member NCBI NM_206953.3 NP_996836.1 Accepted alive Link to Nucleotide Sequence:NM_206953.3Link to Protein Sequence:NP_996836.1Re-query CCDS DB by Nucleotide ID:NM_206953Re-query CCDS DB by Protein ID:NP_996836Link to BLAST:NP_996836.1
Original member Current member NCBI NM_206954.3 NP_996837.1 Accepted alive Link to Nucleotide Sequence:NM_206954.3Link to Protein Sequence:NP_996837.1Re-query CCDS DB by Nucleotide ID:NM_206954Re-query CCDS DB by Protein ID:NP_996837Link to BLAST:NP_996837.1
Original member Current member NCBI NM_206955.3 NP_996838.1 Accepted alive Link to Nucleotide Sequence:NM_206955.3Link to Protein Sequence:NP_996838.1Re-query CCDS DB by Nucleotide ID:NM_206955Re-query CCDS DB by Protein ID:NP_996838Link to BLAST:NP_996838.1
Original member Current member NCBI NM_206956.3 NP_996839.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_206956.3Link to Protein Sequence:NP_996839.1Re-query CCDS DB by Nucleotide ID:NM_206956Re-query CCDS DB by Protein ID:NP_996839Link to BLAST:NP_996839.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278644.1 509 P78395 509 100% 0 0
NP_001278645.1 509 P78395 509 100% 0 0
NP_006106.1 509 P78395 509 100% 0 0
NP_996836.1 509 P78395 509 100% 0 0
NP_996837.1 509 P78395 509 100% 0 0
NP_996838.1 509 P78395 509 100% 0 0
NP_996839.1 509 P78395 509 100% 0 0

Chromosomal Locations for CCDS 13801.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 22548067 22548643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22549726 22550334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22550767 22551089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22556812 22556832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGAACGAAGGCGTTTGTGGGGTTCCATTCAGAGCCGATACATCAGCATGAGTGTGTGGACAAGCCCAC
GGAGACTTGTGGAGCTGGCAGGGCAGAGCCTGCTGAAGGATGAGGCCCTGGCCATTGCCGCCCTGGAGTT
GCTGCCCAGGGAGCTCTTCCCGCCACTCTTCATGGCAGCCTTTGACGGGAGACACAGCCAGACCCTGAAG
GCAATGGTGCAGGCCTGGCCCTTCACCTGCCTCCCTCTGGGAGTGCTGATGAAGGGACAACATCTTCACC
TGGAGACCTTCAAAGCTGTGCTTGATGGACTTGATGTGCTCCTTGCCCAGGAGGTTCGCCCCAGGAGGTG
GAAACTTCAAGTGCTGGATTTACGGAAGAACTCTCATCAGGACTTCTGGACTGTATGGTCTGGAAACAGG
GCCAGTCTGTACTCATTTCCAGAGCCAGAAGCAGCTCAGCCCATGACAAAGAAGCGAAAAGTAGATGGTT
TGAGCACAGAGGCAGAGCAGCCCTTCATTCCAGTAGAGGTGCTCGTAGACCTGTTCCTCAAGGAAGGTGC
CTGTGATGAATTGTTCTCCTACCTCATTGAGAAAGTGAAGCGAAAGAAAAATGTACTACGCCTGTGCTGT
AAGAAGCTGAAGATTTTTGCAATGCCCATGCAGGATATCAAGATGATCCTGAAAATGGTGCAGCTGGACT
CTATTGAAGATTTGGAAGTGACTTGTACCTGGAAGCTACCCACCTTGGCGAAATTTTCTCCTTACCTGGG
CCAGATGATTAATCTGCGTAGACTCCTCCTCTCCCACATCCATGCATCTTCCTACATTTCCCCGGAGAAG
GAAGAGCAGTATATCGCCCAGTTCACCTCTCAGTTCCTCAGTCTGCAGTGCCTGCAGGCTCTCTATGTGG
ACTCTTTATTTTTCCTTAGAGGCCGCCTGGATCAGTTGCTCAGGCACGTGATGAACCCCTTGGAAACCCT
CTCAATAACTAACTGCCGGCTTTCGGAAGGGGATGTGATGCATCTGTCCCAGAGTCCCAGCGTCAGTCAG
CTAAGTGTCCTGAGTCTAAGTGGGGTCATGCTGACCGATGTAAGTCCCGAGCCCCTCCAAGCTCTGCTGG
AGAGAGCCTCTGCCACCCTCCAGGACCTGGTCTTTGATGAGTGTGGGATCACGGATGATCAGCTCCTTGC
CCTCCTGCCTTCCCTGAGCCACTGCTCCCAGCTTACGACCTTAAGCTTCTACGGGAATTCCATCTCCATA
TCTGCCCTGCAGAGTCTCCTGCAGCACCTCATCGGGCTGAGCAATCTGACCCACGTGCTGTATCCTGTCC
CCCTGGAGAGTTATGAGGACATCCATGGTACCCTCCACCTGGAGAGGCTTGCCTATCTGCATGCCAGGCT
CAGGGAGTTGCTGTGTGAGTTGGGGCGGCCCAGCATGGTCTGGCTTAGTGCCAACCCCTGTCCTCACTGT
GGGGACAGAACCTTCTATGACCCGGAGCCCATCCTGTGCCCCTGTTTCATGCCTAATTAG

Translation (509 aa):
MERRRLWGSIQSRYISMSVWTSPRRLVELAGQSLLKDEALAIAALELLPRELFPPLFMAAFDGRHSQTLK
AMVQAWPFTCLPLGVLMKGQHLHLETFKAVLDGLDVLLAQEVRPRRWKLQVLDLRKNSHQDFWTVWSGNR
ASLYSFPEPEAAQPMTKKRKVDGLSTEAEQPFIPVEVLVDLFLKEGACDELFSYLIEKVKRKKNVLRLCC
KKLKIFAMPMQDIKMILKMVQLDSIEDLEVTCTWKLPTLAKFSPYLGQMINLRRLLLSHIHASSYISPEK
EEQYIAQFTSQFLSLQCLQALYVDSLFFLRGRLDQLLRHVMNPLETLSITNCRLSEGDVMHLSQSPSVSQ
LSVLSLSGVMLTDVSPEPLQALLERASATLQDLVFDECGITDDQLLALLPSLSHCSQLTTLSFYGNSISI
SALQSLLQHLIGLSNLTHVLYPVPLESYEDIHGTLHLERLAYLHARLRELLCELGRPSMVWLSANPCPHC
GDRTFYDPEPILCPCFMPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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