NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33276.1 Public Homo sapiens 2 PSD4 24 110 108 CCDS HistoryNCBI Gene:23550Re-query CCDS DB by CCDS ID:33276.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000245796.11 ENSP00000245796.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000245796.11Link to Ensembl Protein Viewer:ENSP00000245796.6Re-query CCDS DB by Nucleotide ID:ENST00000245796Re-query CCDS DB by Protein ID:ENSP00000245796
Original member Current member NCBI NM_012455.3 NP_036587.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012455.3Link to Protein Sequence:NP_036587.2Re-query CCDS DB by Nucleotide ID:NM_012455Re-query CCDS DB by Protein ID:NP_036587Link to BLAST:NP_036587.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036587.2 1056 Q8NDX1-1 1056 100% 0 0

Chromosomal Locations for CCDS 33276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113182457 113183512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113184957 113185073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113185365 113185440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113185877 113186255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113192380 113192589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113193048 113193128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113193258 113193370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113193592 113193650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113193859 113193948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113195727 113195770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113196147 113196307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113197564 113197634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113197747 113197913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113198740 113198884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113199083 113199226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113201158 113201415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3171 nt):
ATGATGGGTGACTACAGACTCCCTGACCACCCCCAGCCCATGGAAATTCTCAACCTGTACTTGGGAGACA
GCCTGGAGCCCCACCCAGGAGAGTGCCCAAGGGAAACGTGCAGCCATGAGGATCCACCGGAGCCTTTCGA
GGAGCAAACCTGGGCCACTGACCCTCCTGAACCTACCAGACAAAATGTTCCTCCCTGGGGCTCCGGTGTG
GAGCTCACACACCTGGGGAGCTGGGTCCATCAGGACGGGCTGGAGCCTTGCCAGGAGCAAACCCGGGCCA
CTGACCCTCCTGAATCTACCAGACAAGATGCTCCTCCCTGGGGCTCCGGTGTGGAGCTCACACACCTGGG
GAGCCCCTCTGCCCAGAGGGAGCACAGGCAGAACACAGCATCACCAGGGTCACCAGTGAACAGCCATCTA
CCGGGGAGCCCAAAGCAGAACCGGAGCACGTCCACACAGGTAGTGTTCTGGGCAGGCATCCTGCAGGCCC
AGATGTGTGTCCTAGACCTGGAGGAGGAGCTGGAGAAGACGGAAGGGCTCAAGGCTGGGCTGAAATGCTG
TCTCCCCACGCCCCCTGTGGACCTCCCCGGGGACACGGGCCTGCACTCCAGCCCACCTGAGAATGAAGAC
TCAGGGGAAGACAGCAGTGAGCCTGAGGGAGAGGGCCAGGCATGGCTGAGAGAGGGAACCCCAGACTCTT
CCCCACAGTGGGGAGCTGAGGAGGAGAGCATGTTCTTCAGCAACCCCCTCTTCCTGGCGAGTCCTTGCTC
AGAGAACAGTGCTTCTGGAGAGTGCTTTTCCTGGGGGGCTTCAGACTCCCATGCAGGTGTGAGGACTGGA
CCTGAGAGCCCAGCGACTCTGGAGCCTCCCCTCCCAGAAGACACAGTGCTGTGGGAGCTGGAAAGTGAGC
CAGATTTGGGGGACGGCGCTGCTATCAGTGGGCATTGTACCCCTCCATTCCCTGTGCCCATCTATAAACC
ACACTCCATCTGCTGGGCCTCAGTGGCTGCCGCTGAGGGGGCTCCTGCAGCACCTCCTGGTCACGGGGAG
AGTGAGGGAGATAGGCTTGGTCCTGCTCCATCTGCAGCACCGTGTGTGGACGAAGCATTGACCTGGGAAT
CAGGATGTGTCGGATCTGATCTTGGCCCTGCTGCACATCCTGTGCAACCTTGGGCCTCTCTCAGCCCTGA
GGGCTGGCAGAGAGGAGGTCCTTTTTGGCCCCAGGTGACTCTTAACTCCCAGGACAGAGATGAGAGGGAG
GGTGGACACCCCCAGGAATCTCTTCCCTGCACCTTGGCCCCCTGCCCCTGGAGGAGCCCAGCTTCTTCTC
CAGAGCCTAGCAGCCCAGAATCTGAGAGCAGAGGCCCTGGTCCCAGGCCCAGCCCTGCATCGTCCCAGGA
GGGCAGCCCGCAGCTTCAACACCACAGCTCAGGCATTTTGCCCAAGTGGACACTAGATGCTTCACAGTCT
TCACTCTTGGAGACGGATGGGGAACAGCCAAGTTCCTTGAAGAAAAAGGAGGCAGGGGAGGCCCCAAAAC
CAGGCGAGGAAGTAAAGAGTGAAGGAACAGCCAGGCCTGCAGAGACTGGAGACGTCCAGCCTGACATTCA
CCTGACTTCTGCAGAACATGAGAATCTGAGGACACCGATGAACTCTTCTTGGCTTCCTGGGAGCCCTATG
CCCCAAGCACAGTCCCCAGAGGAAGGCCAGAGACCACCAGCTGGAGACAAGCTAGCTAATGGCGTCAGGA
ACAACAAGGTAGCCTGGAACTTGGCCTCACGCCTCTATCGCCTGGAGGGCTTCCGGAAGTCTGAAGTGGC
TGCCTACCTGCAGAAGAACAATGACTTTAGCAGGGCTGTGGCTGAGGAGTACCTGTCCTTCTTCCAGTTT
GGAGGCCAGAGTCTGGACCGAGCCCTCCGGAGCTTCCTCCAGGCCTTGGTGCTCAGTGGGGAGACTCAGG
AACGGGAGCGAATCCTCTACCAGTTCTCCAGACGCTTCCACCATTGCAATCCGGGGATCTTCCCCTCAGT
AGATTCTGTACACACCTTGACATGTGCAATCATGCTGCTTAACACGGACCTGCATGGACAGAACATTGGG
AAGAGCATGAGCTGCCAGGAATTCATAACCAACCTGAATGGGCTGAGGGATGGCGGGAACTTCCCCAAGG
AGCTGCTGAAGGCCCTCTACTGGTCTATCCGCAGCGAGAAGCTCGAGTGGGCCGTGGATGAAGAAGACAC
AGCCAGACCTGAGAAGGCCCAGCCGTCCCTGCCAGCTGGCAAGATGAGCAAGCCCTTCCTTCAGCTGGCT
CAGGATCCCACAGTGCCCACCTACAAGCAGGGCATCCTGGCTCGGAAAATGCATCAAGATGCAGACGGCA
AGAAGACGCCATGGGGCAAGCGTGGCTGGAAGATGTTCCACACCTTACTGCGAGGGATGGTTCTCTACTT
CCTGAAGCAGGGAGAAGACCACTGTCTGGAGGGGGAGAGCTTGGTGGGGCAGATGGTGGATGAGCCCGTG
GGGGTGCACCACTCGCTGGCCACCCCCGCCACGCATTACACCAAGAAGCCGCACGTCTTCCAGCTGCGCA
CGGCTGACTGGCGCCTCTACCTCTTCCAGGCACCCACTGCCAAGGAGATGAGCTCCTGGATCGCGCGCAT
CAACTTGGCTGCGGCCACGCACTCCGCGCCGCCCTTCCCCGCCGCTGTGGGCTCCCAGCGCAGATTCGTG
CGGCCCATCCTGCCCGTGGGCCCCGCCCAGAGCTCCCTGGAGGAGCAGCATCGATCCCACGAGAACTGCC
TGGACGCTGCCGCGGACGACCTGCTGGATCTACAGAGGAACCTGCCGGAGCGGCGGGGCCGTGGCCGCGA
GCTGGAGGAGCACCGCCTGCGGAAGGAGTACCTGGAGTACGAGAAAACCCGCTACGAGACCTACGTGCAG
CTGCTGGTGGCCCGCCTGCACTGCCCCTCTGATGCTCTGGACCTGTGGGAGGAGCAGCTGGGGAGGGAAG
CTGGAGGCACTCGGGAGCCCAAGCTCAGCCTGAAGAAGTCCCACTCGAGCCCGTCCCTGCACCAGGATGA
GGCTCCCACCACGGCCAAGGTGAAGCGCAACATCTCAGAGCGCAGAACCTACCGGAAGATCATCCCTAAG
CGGAACCGCAATCAGCTGTGA

Translation (1056 aa):
MMGDYRLPDHPQPMEILNLYLGDSLEPHPGECPRETCSHEDPPEPFEEQTWATDPPEPTRQNVPPWGSGV
ELTHLGSWVHQDGLEPCQEQTRATDPPESTRQDAPPWGSGVELTHLGSPSAQREHRQNTASPGSPVNSHL
PGSPKQNRSTSTQVVFWAGILQAQMCVLDLEEELEKTEGLKAGLKCCLPTPPVDLPGDTGLHSSPPENED
SGEDSSEPEGEGQAWLREGTPDSSPQWGAEEESMFFSNPLFLASPCSENSASGECFSWGASDSHAGVRTG
PESPATLEPPLPEDTVLWELESEPDLGDGAAISGHCTPPFPVPIYKPHSICWASVAAAEGAPAAPPGHGE
SEGDRLGPAPSAAPCVDEALTWESGCVGSDLGPAAHPVQPWASLSPEGWQRGGPFWPQVTLNSQDRDERE
GGHPQESLPCTLAPCPWRSPASSPEPSSPESESRGPGPRPSPASSQEGSPQLQHHSSGILPKWTLDASQS
SLLETDGEQPSSLKKKEAGEAPKPGEEVKSEGTARPAETGDVQPDIHLTSAEHENLRTPMNSSWLPGSPM
PQAQSPEEGQRPPAGDKLANGVRNNKVAWNLASRLYRLEGFRKSEVAAYLQKNNDFSRAVAEEYLSFFQF
GGQSLDRALRSFLQALVLSGETQERERILYQFSRRFHHCNPGIFPSVDSVHTLTCAIMLLNTDLHGQNIG
KSMSCQEFITNLNGLRDGGNFPKELLKALYWSIRSEKLEWAVDEEDTARPEKAQPSLPAGKMSKPFLQLA
QDPTVPTYKQGILARKMHQDADGKKTPWGKRGWKMFHTLLRGMVLYFLKQGEDHCLEGESLVGQMVDEPV
GVHHSLATPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMSSWIARINLAAATHSAPPFPAAVGSQRRFV
RPILPVGPAQSSLEEQHRSHENCLDAAADDLLDLQRNLPERRGRGRELEEHRLRKEYLEYEKTRYETYVQ
LLVARLHCPSDALDLWEEQLGREAGGTREPKLSLKKSHSSPSLHQDEAPTTAKVKRNISERRTYRKIIPK
RNRNQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH