NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23545.1 Public Mus musculus 9 Atrip 23 108 98 CCDS HistoryNCBI Gene:235610Re-query CCDS DB by CCDS ID:23545.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045011.8 ENSMUSP00000044831.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045011.8Link to Ensembl Protein Viewer:ENSMUSP00000044831.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000045011Re-query CCDS DB by Protein ID:ENSMUSP00000044831
Original member Current member NCBI NM_172774.3 NP_766362.2 Accepted alive Link to Nucleotide Sequence:NM_172774.3Link to Protein Sequence:NP_766362.2Re-query CCDS DB by Nucleotide ID:NM_172774Re-query CCDS DB by Protein ID:NP_766362Link to BLAST:NP_766362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766362.2 785 Q8BMG1 785 100% 0 0

Chromosomal Locations for CCDS 23545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109059841 109059908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109060263 109060512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109060629 109060709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109061110 109061201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109061532 109061668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109065128 109065799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109065966 109066092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109067017 109067118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109067753 109067910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109069279 109069397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109071718 109071888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109072607 109072737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109073755 109074004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGGCCGGGACCCCCGCACCGAACAGCCACAGGAAACAGAGTGGCGGCCTGGAGCCTTTCCCCGGTCTGT
CTCGATCCATTGAGAACCCTCCGAGCAAGCGGGCCCGGAGCTTCTCTGAGACCACAGTCCCGGACCCCGA
AGACCCATTCGGTGAGCACGCGGAATTTACTGCGGACGACCTAGAGGAACTCGACATCCTCGCGTCACAG
GCCCTGAGCCAGTGTCCCGTCGCGCCTCGGAACCTGTCCAGTGCTCATAAGGTCCGCCGATTAGATGGGT
TACCAAATAGTCCTATAAGGAAAAGCAGAGAAGATATTCCAGTTAAAGATAATTTTGAATTAGAAGTACT
TCAGATACAATACAAAGAACTTAAAGAAAAGCTGAAAGCAATGGAAGAAGAAATCCTAATTAAGAATGGA
GAAATTAAAATTTTGCGTGACTCTCTGCGTCAGACAGAATCCGTTCTAGAAGAACAGAAAAGATCACATT
TCCTTCTTGAGCAAGAAAAGACTCAAGCACTCAGTGAAAAGGAAAAGGAATTCTCCAGAAAGCTCCAATC
ACTGCAGTCTGAACTGCAGTTTAAAGACGCAGAAATGAATGAGTTAAGGACAAAGTCTCAGAGCAACGGA
CGAACAAATAAGCCAGCCGCTCCCTCCGTCTCCCACGTCAGTCCTAGGAAAGGCTCTTCTGTGGTTCTCA
AGTCAGAAGCATGTTCTCCACATGTTGGAAAAACAACTTTCCCTACAAAAGAATCTTTTAGTGCTAACAC
GCCTCTCTTCCACCCCTGTCAGACTGAGGCAGGACACAGATTTCTGGTGGGCCAAGAGGTTTCAGATAAT
AAAAACCACAGTCTGGGAGGTAGCCTCATGAAGCAAGATGTGCAGCAGAGAATTCTGGCTGATGGCTGGA
TGCAGAGAAAAGATGCTCAAGGTTCTATTTTGATAAACTTGCTCCTGAAGCAACCTTTGGTGCCAGGGTC
ATCTCTAGGTCTTTGTCACCTTCTGAGCAGTTGTCCTGAGGTTCCTACTGGCACCCTCTTGCAGCCACCA
GGGCTCAGTACTTTGCCTGGGACTTCAGGCCTCAGGACCATCAGTTCTTCTGATGGGCCATTTTCCCCCT
CTGCCCTGAGAGAAGCACAGAACTTGGCATTCACTGGATTAAATCTGGTTGCCAGGACTGAGAGCTCACA
TGATGGAGACATGGCAGGCAGAAGAGTCTTCCCGCTCCACCAGCTTCCTGGAGCTGTGCATCTCCTTCCT
CTTGTGCAGTTTTTCGTCGGCTTACACTGCCAGGCTCTGCAAGATTTAGCCCCAGCTAAGAAGAGTGGGG
TGCCTGGGGACTCTGCGACACATACCTCCTGCATGAGCTCTGGGGTCGAGGCTAGCCCAGAGGACTCCAT
TCATGGCTTGGAGAGCTTTTCTGTGGCATCACTCAGCGTCCTTCAGAACCTGGTGTGCCACAGTGGGGCA
GTTGTCTGCCTGTTACTGTCAGGCATGGGGACAGAAGCTGCCGCCAGGGAAGGAAACTTGGTCCAGACTT
GTGCAGATACAACCTCAGCCTCCAGGGAGGATGCTCATGACCAAGACCAGCACCCACTGCTAAAGATGCT
TCTTCAGCTGATGGCTTCCTCCTCTGCAGCATCAGGTCATTTTCAAGCCAGTGTCCTGGGCCTGTGCCTC
AAAGTTTTGGTGAAATTAGCAGAAAACGCTTCCTCTGATTTGTTGCCCAGGTTCTCCTGTGTGTTCCCGG
TGTTGCCACAGTGCCTCGGCTCAGCGCTGCCGCTGCCCTGTGTGCTCCTGGCTGTTGAGCTGCTCTCTGT
GCTGCTGGACCATGACAGCCTAGCATGGCAGCTATGCTCCCACCCAGAAGGCTGCCTTCTCCTGAGGCTG
TACATGTACATCACATCAAGGCCTGACAGAACGGCCTCAGAGACACAGTGGCTTCAGCTGGAACAAGAGG
TAGTATGGCTCTTGGCCAAGCTGAGTGTACAGAGCCCTGCCCCCGCTGGCATTGGTTCTGACTGTCACTG
CAATGTAGAGGCAGTCAGAGCGCTCACTGTGATGTTGCACAGGCAATGGCTGACGGTGCGGCGGGCAGGA
GGTCCAAGGACCCACCAGCAGAAGCAGACGATACGCTGTCTGCGGGACACTGTGCTGCTGCTGCATAGCC
TATCTCAGAAGGACAAGCTCTTCACTGTGCACTGTGTCGAGGTCCTGCATCAGTACGACCAGGTGATGCC
AGGGGTCAGCATGCTGATTCGAGCCCTTCCTGATGTGACTGACTGTGAAGAGGCTGCCCTGGATGACCTC
TGTGCTGCGGAGACTGATTTGGAAGACTCTGAGATGGACTGTAACTGA

Translation (785 aa):
MAGTPAPNSHRKQSGGLEPFPGLSRSIENPPSKRARSFSETTVPDPEDPFGEHAEFTADDLEELDILASQ
ALSQCPVAPRNLSSAHKVRRLDGLPNSPIRKSREDIPVKDNFELEVLQIQYKELKEKLKAMEEEILIKNG
EIKILRDSLRQTESVLEEQKRSHFLLEQEKTQALSEKEKEFSRKLQSLQSELQFKDAEMNELRTKSQSNG
RTNKPAAPSVSHVSPRKGSSVVLKSEACSPHVGKTTFPTKESFSANTPLFHPCQTEAGHRFLVGQEVSDN
KNHSLGGSLMKQDVQQRILADGWMQRKDAQGSILINLLLKQPLVPGSSLGLCHLLSSCPEVPTGTLLQPP
GLSTLPGTSGLRTISSSDGPFSPSALREAQNLAFTGLNLVARTESSHDGDMAGRRVFPLHQLPGAVHLLP
LVQFFVGLHCQALQDLAPAKKSGVPGDSATHTSCMSSGVEASPEDSIHGLESFSVASLSVLQNLVCHSGA
VVCLLLSGMGTEAAAREGNLVQTCADTTSASREDAHDQDQHPLLKMLLQLMASSSAASGHFQASVLGLCL
KVLVKLAENASSDLLPRFSCVFPVLPQCLGSALPLPCVLLAVELLSVLLDHDSLAWQLCSHPEGCLLLRL
YMYITSRPDRTASETQWLQLEQEVVWLLAKLSVQSPAPAGIGSDCHCNVEAVRALTVMLHRQWLTVRRAG
GPRTHQQKQTIRCLRDTVLLLHSLSQKDKLFTVHCVEVLHQYDQVMPGVSMLIRALPDVTDCEEAALDDL
CAAETDLEDSEMDCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH