NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS81087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81087.1 Public Mus musculus 9 Rtp3 23 108 98 CCDS HistoryNCBI Gene:235636Re-query CCDS DB by CCDS ID:81087.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199891.1 ENSMUSP00000143305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199891.1Link to Ensembl Protein Viewer:ENSMUSP00000143305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199891Re-query CCDS DB by Protein ID:ENSMUSP00000143305
Original member Current member NCBI NM_153100.2 NP_694740.2 Accepted alive Link to Nucleotide Sequence:NM_153100.2Link to Protein Sequence:NP_694740.2Re-query CCDS DB by Nucleotide ID:NM_153100Re-query CCDS DB by Protein ID:NP_694740Link to BLAST:NP_694740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694740.2 474 Q5QGU6 474 100% 0 0

Chromosomal Locations for CCDS 81087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110985871 110986527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110986714 110987314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110989445 110989611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGATGGAAGAAGACATAGGAGACACAGAGCAATGGCGACATGTGTTCCAGGAGCTAATGCAAGAGGTGA
AACCCTGGCACAAATGGACCCTCATACCAGACAAGAACCTTCTTCCCAACGTTTTGAAGCCAGGATGGAC
GCAATACCAGCAAAAGACCTTTGCTAGGTTCCACTGTCCTTCCTGCTCTCGAAGTTGGGCATCTGGCCGA
GTTCTGATAGTCTTCCACATGCGGTGGTGTGAGAAGAAGGCCAAGGGGTGGGTGAAGATGAGGGTGTTTG
CTCAGAGATGTAATCAGTGCCCCGAGCCTCCATTTGCAACTCCAGAAGTCACTTGGGACAACATCTCAAG
GATCTTGAACAACCTGCTCTTCCAAATTCTGAAGAAGTGCTATAAAGAAGGATTTAAGCAAATGGGTGAG
ATTCCTTTGCTAGGGAACACCAGTCTCGAAGGGCCACATGACAGCAGCAACTGTGAGGCCTGTCTCCTGG
GCTTTTGTGCTCAGAATGACTTAGGCCAAGCCTCAAAACCACCAGCACCCCCATTATCTCCTACCTCCTC
GAAGTCAGCCAGGGAGCCCAAGGTCACTGTCACCTGTAGCAACATTTCCTCCTCACGGCCCTCCTCTAAA
GTACAGATGCCCCAAGCATCAAAAGTGAACCCCCAAGCCAGTAACCCTACCAAAAATGACCCCAAAGTTA
GCTGCACCTCAAAACCACCAGCACCCCCATTATCTCCTACCTCCTTAAAGTCAGCCAGGGAGCCTAAGGT
CACTGTCACCTGTAGCAACATTTCCTCCTCGCGGCCCTCCTCTAAAGTACAGATGCCCCAAGCATCAAAA
GTGAACCCCCAAACCAGTAATCCTACCAAAAATGACCCCAAGATTAGCTGTACCTCAAAACCATCAACTA
CTCCAAGACTGACAATACAACAGCTGTCAGTAGTAAGCCCACCTGCCCCTGCCCCTACATGTGTCATTCA
AATGCCTTCTCCCACTCCCATCGACGGCAGCAGAGCAGCAGATGTAGCAAAGGAGAACACCAGATCCAAG
ACCCCAAAGGCATTGCTCTCATCCCCTTTATACGTCCCACCCACTTCCTCCTATGTCCCACCCACTTCCT
CCTATGTCCCACCCACTTCCTCCTATGTCCCGCCCACTTCCTCTTATGTCCCACCCACTTCCTCCTCAGT
TATTGTGCCCATTTCCTCCTCGTGGAGACTACCAGAAAACACTATTTGCCAAGTAGAGAGAAACAGTCAT
ATCCACCCGCAAAGCCAGTCTTCCTGCTGTGGGGCCTGCTGCGAGTCCTGGTGTGAGATCTTCAGGTACT
CATGCTGTGAGGCCGCCTGTAATTGCATGTCACAGAGTCCACTGTGTTGCTTGGCCTTTCTAATCTTGTT
CTTATTGCTGTGGTATTTATTATAA

Translation (474 aa):
MMEEDIGDTEQWRHVFQELMQEVKPWHKWTLIPDKNLLPNVLKPGWTQYQQKTFARFHCPSCSRSWASGR
VLIVFHMRWCEKKAKGWVKMRVFAQRCNQCPEPPFATPEVTWDNISRILNNLLFQILKKCYKEGFKQMGE
IPLLGNTSLEGPHDSSNCEACLLGFCAQNDLGQASKPPAPPLSPTSSKSAREPKVTVTCSNISSSRPSSK
VQMPQASKVNPQASNPTKNDPKVSCTSKPPAPPLSPTSLKSAREPKVTVTCSNISSSRPSSKVQMPQASK
VNPQTSNPTKNDPKISCTSKPSTTPRLTIQQLSVVSPPAPAPTCVIQMPSPTPIDGSRAADVAKENTRSK
TPKALLSSPLYVPPTSSYVPPTSSYVPPTSSYVPPTSSYVPPTSSSVIVPISSSWRLPENTICQVERNSH
IHPQSQSSCCGACCESWCEIFRYSCCEAACNCMSQSPLCCLAFLILFLLLWYLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH