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Report for CCDS41200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41200.1 Public Mus musculus X Ppef1 23 108 98 CCDS HistoryNCBI Gene:237178Re-query CCDS DB by CCDS ID:41200.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071204.11 ENSMUSP00000071191.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071204.11Link to Ensembl Protein Viewer:ENSMUSP00000071191.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071204Re-query CCDS DB by Protein ID:ENSMUSP00000071191
Original member Current member NCBI NM_011147.1 NP_035277.1 Accepted alive Link to Nucleotide Sequence:NM_011147.1Link to Protein Sequence:NP_035277.1Re-query CCDS DB by Nucleotide ID:NM_011147Re-query CCDS DB by Protein ID:NP_035277Link to BLAST:NP_035277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035277.1 650 O35655 650 100% 0 0

Chromosomal Locations for CCDS 41200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 160623504 160623703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160624564 160624648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160625677 160625840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160631855 160631961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160633194 160633336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160635008 160635193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160638159 160638305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160641851 160642000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160643268 160643304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160646631 160646797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160672578 160672624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160676633 160676747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160685170 160685339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160691496 160691556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160693487 160693614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160719807 160719852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGGGCTGTGGCACTTCTTCAAAAAAAGGCAACAAATCTAAGAAAGTGATAAAAGCCGCGTTAGTCATCC
AAAATTGGTACCGGCGGTACAGAGCTCGACTGAGGGTCAGACAGCATTATGCCCTCGCCATCTTCCAGTC
TATTGAATATTCTGACGAGCAAGGCCAAATGCAGCTATCCAGCTTCTTTTCGTTCATGTTGGAAAACTAC
ACAAAGACAAATAATGAAGATTCAGCATTAGTAACTCGAATTTTTGACAACACCAGGCGGGAAAGCCAAA
TCAAGGATAGAGATGACTTTTTGGGGTTGATAGAAGTGCCTGACTCCTATGATGGTCCTCGGCTGCAGTT
TCCTCTGACGTTTACTGACATCCATATACTTCTTCAGGCCTTCAAGCAACAGCAGATACTTCATGCTCAC
TACGTCTTAGAGGTGCTATTTGAAGCTAGGAAAGTCCTGAAGCAAATGCCGAATTTCTCTCATGTAAAAA
CCTTTCCCGCCAAAGAGATAACAATATGTGGTGATTTGCATGGGAAACTGGATGATCTTATGCTGATTTT
CTATAAGAATGGCCTGCCTTCAGAGAACAATCCATACGTTTTCAATGGTGACTTTGTAGATCGAGGAAAC
AATTCCATGGAGATCCTAATGATCCTGCTTGTTTGTTTTCTTGTCTACCCCTCTGACCTGCACCTCAATA
GAGGGAACCATGAAGACTTTATGATGAACCTGAGGTATGGCTTCACAAAAGAAATTTTACAAAAATACAA
GCTACACGGGAGAAAAATCTTACAAGTCTTGGAAGAAGTCTATACCTGGCTCCCAATCGGTACAATTATT
GACAACGAAATCCTGGTCATACATGGTGGGATATCAGAATCCACAGACTTGAATACACTCCACCAGTTAC
AAAGAAATAAAATGAAATCTGTGTTGATGCCGCCAGTGTTGGGAAATCAAGAGACTGGCGAAAAGAGAAA
TAAATCAGCGTCAAATTATGTTGAACCAAGGAAGGTTGAACCAGACAAGACTCCTTCTGAAGACTTGACA
AAGCAAGAATGGGAACAAATAGTTGACATTCTGTGGAGTGACCCCAGAGGCAAAAAAGGCTGTTATCCAA
ACACAAGCCGAGGAGGGGGCTGCTATTTTGGACCAGATGTTACCTCTAAGGTTCTTAGTAAAAACCAGTT
GAAGATGCTCATTAGGTCTCATGAGTGTAAACCCGACGGGTATGAAGTCTCTCATGATGGAAAGGTCATT
ACTGTATTTTCTGCTTCTAATTATTATGAAGAAGGCAGCAACCGAGGAGCTTACATCAGACTAAGTTATG
GTACAATGCCACAATTTTTCCAGTACCAAGTAACTAGTACATCATGCCTGAACCCTCTTCACCAAAGGAT
GAATGCTATGGAATCCAGTGCTTTCAAGATACTAAAGGAAAAAATGATTTCACGAAAAACTGATCTCATC
AACGCTTTCGAGCTCCGTGACCACAGTAGGTCAGGAAGGATTTCATTGGCCGAGTGGGCATTTTCTATGG
AGAACATTTTGGGGCTGAACTTACCATGGAGATCTCTAAGTTCACACCTGGTAACCATTGATTCCAGCGG
AAGTGTTGACTACATGTCCAGCTTTGACGATATCCGTATTGAAAAGCCTACGAAAGATATGAAGTCCAAT
CTAACTGAAACTATGTACAGATACCGATCTGACCTGAAAATCATATTTAATATCATCGACAGTGATCAAT
CAGGTCTGATCTCCATGGATGAATTTCGGACCATGTGGAAACTTTTCAATGCTCATTACAAAGCTCATAT
AGATGATTCCCAAATTGATGAGCTTGCCAGCATAGTGGACTTCAACAAAGATGGCAACATCGACTTTAAT
GAGTTTTTAAAGGCTTTCTATGTAGTACATAAATATGATAAGCCAGGGACCAGTCTTGCTTAA

Translation (650 aa):
MGCGTSSKKGNKSKKVIKAALVIQNWYRRYRARLRVRQHYALAIFQSIEYSDEQGQMQLSSFFSFMLENY
TKTNNEDSALVTRIFDNTRRESQIKDRDDFLGLIEVPDSYDGPRLQFPLTFTDIHILLQAFKQQQILHAH
YVLEVLFEARKVLKQMPNFSHVKTFPAKEITICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRGN
NSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGRKILQVLEEVYTWLPIGTII
DNEILVIHGGISESTDLNTLHQLQRNKMKSVLMPPVLGNQETGEKRNKSASNYVEPRKVEPDKTPSEDLT
KQEWEQIVDILWSDPRGKKGCYPNTSRGGGCYFGPDVTSKVLSKNQLKMLIRSHECKPDGYEVSHDGKVI
TVFSASNYYEEGSNRGAYIRLSYGTMPQFFQYQVTSTSCLNPLHQRMNAMESSAFKILKEKMISRKTDLI
NAFELRDHSRSGRISLAEWAFSMENILGLNLPWRSLSSHLVTIDSSGSVDYMSSFDDIRIEKPTKDMKSN
LTETMYRYRSDLKIIFNIIDSDQSGLISMDEFRTMWKLFNAHYKAHIDDSQIDELASIVDFNKDGNIDFN
EFLKAFYVVHKYDKPGTSLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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