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Report for CCDS24242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24242.1 Public Mus musculus 10 Stac3 23 108 98 CCDS HistoryNCBI Gene:237611Re-query CCDS DB by CCDS ID:24242.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035839.2 ENSMUSP00000048148.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035839.2Link to Ensembl Protein Viewer:ENSMUSP00000048148.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000035839Re-query CCDS DB by Protein ID:ENSMUSP00000048148
Original member Current member EBI ENSMUST00000160019.7 ENSMUSP00000125124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160019.7Link to Ensembl Protein Viewer:ENSMUSP00000125124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160019Re-query CCDS DB by Protein ID:ENSMUSP00000125124
Original member Current member NCBI NM_001359751.1 NP_001346680.1 Accepted alive Link to Nucleotide Sequence:NM_001359751.1Link to Protein Sequence:NP_001346680.1Re-query CCDS DB by Nucleotide ID:NM_001359751Re-query CCDS DB by Protein ID:NP_001346680Link to BLAST:NP_001346680.1
Original member Current member NCBI NM_177707.4 NP_808375.1 Accepted alive Link to Nucleotide Sequence:NM_177707.4Link to Protein Sequence:NP_808375.1Re-query CCDS DB by Nucleotide ID:NM_177707Re-query CCDS DB by Protein ID:NP_808375Link to BLAST:NP_808375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346680.1 360 Q8BZ71 360 100% 0 0
NP_808375.1 360 Q8BZ71 360 100% 0 0

Chromosomal Locations for CCDS 24242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127502784 127502849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127503090 127503354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127503568 127503665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127503856 127503916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127504858 127504955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127507226 127507292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127507461 127507513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127507699 127507784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127507946 127507997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127508081 127508218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127508380 127508478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGACAGAAAAGGAAGTGGTGGAGTCCCCTCAGCCCCCCTTTCCAGGAGAGACTCCGCAAAGTGGGCTAC
AGCGACTGAAGCAGTTATTCAAGAAGGGCTCTCCAGAGACAGCTGAGATGGAGCCTCCCCCAGAGCCCCA
AGCCAATGGAGAGGCGGTGGGGGCTGGGGGTGGGCCCATCTACTATATCTATGAGGAAGAAGAGGAGGAG
GAGGAAGAGGAGGAACCACCCCCAGAACCTCCTAAGCTCGTCAACGACAAGCCCCACAAGTTCAAAGATC
ACTTCTTCAAGAAGCCCAAGTTCTGCGATGTCTGTGCCCGGATGATTGTGCTCAATAACAAGTTTGGACT
CCGCTGCAAGAACTGCAAAACCAACATCCATGAGCATTGTCAGTCCTACGTGGAGATGCAGAGATGCTTC
GGCAAGATCCCACCTGGTTTCCGTCGGGCCTATAGCTCCCCACTCTACAGCGACCAACAGTACGCTGTCT
CTGCTGCCAATCGCAATGACCCCGTGTTTGAAACCCTGCGCGTCGGGGTGATCATGGCAAACAAGGAACG
GAAGAAGGGGCAGGCAGATAAGAAAAATCCTCTGGCAGCCATGATGGAGGAGGAGCCAGAGTCAGCCAGG
CCAGAGGAGGGCAAGTCACAGGATGGAAACAATGCAGAAAAGGACAAGAAGGCCGAGAAGAAAACTCCTG
ATGACAAAAACAAGCAGCCTGGCTTCCAGCAGTCTCATTACTTTGTGGCTCTCTATCGGTTCAAAGCCCT
GGAGAAGGACGACCTGGATTTCCCGCCAGGGGAGAAGATCACAGTCATTGATGACTCCAATGAGGAGTGG
TGGCGGGGGAAAATCGGAGAGAAAGTCGGATTCTTCCCTCCAAACTTCATCATTCGGGTGCGGGCTGGAG
AACGTGTGCACCGCGTGACCAGATCGTTTGTGGGGAACCGCGAGATTGGACAGATCACTCTCAAGAAGGA
CCAGATCGTAGTGCAGAAAGGAGATGAAGCTGGTGGTTACGTCAAGGTCTACACCGGCCGCAAGGTGGGG
CTGTTTCCCACCGACTTCCTGGAGGAGATTTAA

Translation (360 aa):
MTEKEVVESPQPPFPGETPQSGLQRLKQLFKKGSPETAEMEPPPEPQANGEAVGAGGGPIYYIYEEEEEE
EEEEEPPPEPPKLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCF
GKIPPGFRRAYSSPLYSDQQYAVSAANRNDPVFETLRVGVIMANKERKKGQADKKNPLAAMMEEEPESAR
PEEGKSQDGNNAEKDKKAEKKTPDDKNKQPGFQQSHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEW
WRGKIGEKVGFFPPNFIIRVRAGERVHRVTRSFVGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGRKVG
LFPTDFLEEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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