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Report for CCDS48740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48740.1 Public Mus musculus 11 Pla2g3 23 108 98 CCDS HistoryNCBI Gene:237625Re-query CCDS DB by CCDS ID:48740.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064265.12 ENSMUSP00000068699.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064265.12Link to Ensembl Protein Viewer:ENSMUSP00000068699.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064265Re-query CCDS DB by Protein ID:ENSMUSP00000068699
Original member Current member NCBI NM_172791.2 NP_766379.2 Accepted alive Link to Nucleotide Sequence:NM_172791.2Link to Protein Sequence:NP_766379.2Re-query CCDS DB by Nucleotide ID:NM_172791Re-query CCDS DB by Protein ID:NP_766379Link to BLAST:NP_766379.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766379.2 504 Q8BZT7 504 100% 0 0

Chromosomal Locations for CCDS 48740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3488352 3488853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3489762 3489894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3490143 3490277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3490807 3491090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3491892 3492021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3492126 3492242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3492970 3493183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGGGGTCCTGGGGGTACTTCTAGGAGTGCTGGCTTTCCTAGAGGGCTCCCATACCCGTCACTGGGACA
GTACCTCCTGCCATTTGGTCCAGCCCATCCCTGGTAACCCTCTGGGCTCCCTGAGCTTCTTGGGCAAAGA
TGCCCAAGGCCTGGCATTATTCCAGGCCTTCTGGGATACACACCACAGGCTGCAGGTTTGTATCAGGCAG
GATGAATCTGAACTTATCACAGCGTTCAGGGCCCTCTGTGCTCATGAGCCTTTGCAGCACTCCTTCATCC
AAACCCCTGGACCTGCGCTGCAGAGAGCACTGGCCACTCTGCAGAGCCAGTGGGAGGCATGTCAAAGGTC
TCAGGATAGTCCTACAGGAGCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCAC
CGTCGAAGGAGGAGAGGCTGGACCATTCCTGGCACGCTGTGGTGCGGTGTTGGGAACTCTGCTGAAAATG
CCTCAGAACTGGGCGTGTTCCACGGCCCTGACCTCTGCTGCCGGGAACACGATCAGTGCCCACAAACCAT
TTCGCCCTTGCAGTATAACTATGGCATCCGAAATTTCCGCTTCCACACCATCTCTCACTGCGACTGTGAC
GCCAGGTTTCAACAGTGCCTGAGGAGCCAGGGTGACTCCATCTCCGACATCATGGGCGTGGCCTTCTTCA
ACGTGCTGGAGATCCCCTGCTTTGTGCTGAAGGAGCAGGAGGCCTGTGTGGCTTGGAACTGGTGGGGCGG
GTGCAGGGCATATGGCTCCACGCCCCTTGCTCACCTTCGGCCCAGGACTTACTATAATGCCTCCTGGAAG
GCTGAGGCCACCTCATATACTCCCAGCCCCCAAAGCCCAGCACCCAGCAAACACCCACAGAAGAGGGGCC
CACAGCAGACACAAGCCAGACGTCACAGCACAACTACCACTACACCTTTCCAGACCCCTGCCATCTCCTC
CAGACCTGATATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACAT
CAAAGTGCCCACCGAGTCTGTCGAAGCCTTCGCCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGG
AAACCAAGTTCCACCTGCTCAACAGTGCCCAGATGCCCCTTTTCCACTGCGATTGCACCCGCCGTCTGGC
ACGTTTCCTGAGGCTCCACAGCCCGCCTGCAGGCACCGACAAAGTTTGGGATCTCCTGGGTACCACCTGC
TTTAAGCTGGCCCCCCAACTTGACTGTGCTGAGGGCAAAGGCTGTTCCAGAGACCACAGGGCCATTAAGG
TGTCAGCTCGGCACTTGCAGAGGCTTCACAAGAGCCGACTCCATTTCAGGGATAAAGGCACAGGTGGGGC
TCTGGCACAGCCTGTGGAGCCCCCAGGGAGCACCATGTCATTCTACAGCCAGTGTCTGCAAGTAACCCAG
GCAATCTGGAGACGCAGGGGACAGAAGAAATTCTGGAGCTCATAA

Translation (504 aa):
MGVLGVLLGVLAFLEGSHTRHWDSTSCHLVQPIPGNPLGSLSFLGKDAQGLALFQAFWDTHHRLQVCIRQ
DESELITAFRALCAHEPLQHSFIQTPGPALQRALATLQSQWEACQRSQDSPTGAREKRAIEQSGAPDREH
RRRRRGWTIPGTLWCGVGNSAENASELGVFHGPDLCCREHDQCPQTISPLQYNYGIRNFRFHTISHCDCD
ARFQQCLRSQGDSISDIMGVAFFNVLEIPCFVLKEQEACVAWNWWGGCRAYGSTPLAHLRPRTYYNASWK
AEATSYTPSPQSPAPSKHPQKRGPQQTQARRHSTTTTTPFQTPAISSRPDMIPRGQPGVPHLGFQDGPKH
QSAHRVCRSLRHLDQCEHQIKPQETKFHLLNSAQMPLFHCDCTRRLARFLRLHSPPAGTDKVWDLLGTTC
FKLAPQLDCAEGKGCSRDHRAIKVSARHLQRLHKSRLHFRDKGTGGALAQPVEPPGSTMSFYSQCLQVTQ
AIWRRRGQKKFWSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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