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Report for CCDS48394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48394.1 Public Mus musculus 1 Smg7 23 108 98 CCDS HistoryNCBI Gene:226517Re-query CCDS DB by CCDS ID:48394.1Re-query CCDS DB by GeneID:226517See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043560.14 ENSMUSP00000041241.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043560.14Link to Ensembl Protein Viewer:ENSMUSP00000041241.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043560Re-query CCDS DB by Protein ID:ENSMUSP00000041241
Original member Current member NCBI NM_001160257.2 NP_001153729.1 Accepted alive Link to Nucleotide Sequence:NM_001160257.2Link to Protein Sequence:NP_001153729.1Re-query CCDS DB by Nucleotide ID:NM_001160257Re-query CCDS DB by Protein ID:NP_001153729Link to BLAST:NP_001153729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153729.1 1146 Q5RJH6-2 1146 100% 0 0

Chromosomal Locations for CCDS 48394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152839272 152839385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152840035 152840180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152840302 152840472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152841025 152841184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152841513 152841593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152843230 152843379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152844036 152844407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152845213 152845595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152846119 152846263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152848734 152849016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152849875 152849994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152852598 152852658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152854310 152854380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152855849 152856002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152856449 152856611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152858879 152859014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152859352 152859502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152860450 152860521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152861681 152861852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152866581 152866713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152868252 152868369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152870760 152870791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152878041 152878093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3441 nt):
ATGAGGACCGAAAACTTGAAATCAGAGGAGCATCTGAAATCAAGTAATATTAGGCAGGCAGAAGTCCTGA
AGGCTGAAATGACAGATTCTAAGCTGGGTCCGGCTGAGGTCTGGACATCCAGGCAAGCTCTGCAGGACTT
GTACCAGAAAATGCTAGTTACTGATCTGGAATACGCTTTAGACAAGAAAGTAGAACAGGATCTCTGGAAT
CATGCCTTTAAGAATCAGATCACAACACTGCAAGGCCAAGCCAAGAATCGAGCAAACCCAAATCGAAGTG
AAGTCCAGGCAAACCTTTCTCTGTTCCTAGAGGCAGCTAGCGGCTTCTATACTCAGTTATTACAGGAACT
GTGTACGGTGTTTAATGTAGATTTGCCATGCCGTGTGAAGTCTTCCCAGTTGGGAATTATTAGCAATAAA
CAGACGCACAGCAGCACCATAGTGAAGCCACAGTCTAGCTCCTGCTCCTACATTTGCCAACACTGCCTCG
TCCACCTTGGAGACATTGCTCGATACAGAAATCAGACTAGCCAGGCAGAGTCCTACTATAGGCATGCAGC
TCAGCTTGTCCCCTCCAATGGTCAGCCTTACAATCAGTTGGCTATCTTAGCTTCTTCCAAAGGAGACCAC
CTGACCACAATTTTCTACTACTGCAGAAGCATTGCTGTGAAATTCCCTTTCCCAGCTGCCTCCACTAATC
TACAAAAAGCACTTTCTAAAGCACTGGAAAGCCGGGATGAGTTGAAAACCAAGTGGGGTGTTTCTGACTT
CATCAAGGCCTTTATTAAATTCCACGGTCATGTATACCTGAGTAAGAGTTTGGAAAAGCTGAGCCCTCTT
CGAGAGAAGTTGGAAGAACAGTTTAAGAGACTGCTGTTCCAAAAGGCTTTCAACTCTCAACAGTTAGTTC
ATGTCACTGTCATTAACCTGTTTCAACTTCATCATCTTCGTGACTTTAGCAATGAAACAGAGCAACACAG
TTACAGCCAAGATGAACAGCTGTGTTGGACACAGTTGCTGGCCCTCTTTATGTCTTTTCTCGGCATCCTG
TGCAAATGTCCTCTCCAGAATGATTCTCAGGAGTCCAACAATGCCTACCCCCTTCCTGCAGTCAAGGTCT
CCATGGACTGGCTAAGACTCCGACCTAGAGTCTTTCAAGAAGCAGTGGTGGATGAAAGACAGTACATTTG
GCCCTGGCTAATTTCTCTTCTAAATAGTTTCCATCCCCGTGAAGATGATCTCTCAAATACTAATGCCACA
CCACTTCCAGAGGAGTTTGAATTACAAGGATTCTTGGCTTTAAGACCTTCTTTCAGGAACTTGGATTTTT
CCAAAGGCCATCAGGGTATTACAGGAGACAAAGAGGGTCAACAACGACGAATACGACAGCAGCGTTTGAT
CTCCATAGGGAAATGGATTGCTGATAACCAGCCACGGCTGATTCAGTGTGAAAATGAGGTAGGGAAATTG
TTATTTATCACAGAAATCCCAGAATTAATACTAGAAGACCCCAGTGAAGCCAAAGAGAACCTCATCCTAC
AAGAAACATCTGTGGTAGAGTCACTGGCTACGGATGGGAGCCCAGGACTGAAATCAGTGCTGTCTACAGG
CCGAAATCCAAGCAACAGCTGTGACTCAGGAGAGAAACCAGTGGTCACCTTTAAAGAGAACATTAAGCCA
CGAGAAGTGAACCAAGGAAGAAGCTTTCCTCCCAAAGAGGTAAAATCCCAGACAGAACTAAGAAAGACTC
CAGTGTCTGAAGCCAGGAAAACGCCTGTCACTCAAACTCCAAGTCAAACGAGTAATTCTCAGTTCATCCC
CATCCATCACCCTGGAGCCTTCCCTCCTCTTCCCAGCCGACCAGGATTCCCGCCCCCAACATATGTTATC
CCCCCTCCTGTGGCATTTTCTATGGGCTCAGGTTACACCTTCCCAGCTGGTGTTTCTGTCCCAGGAACCT
TTCTTCAGTCTACAGCTCACTCTCCAGCAGGAAACCAGGTGCAAGCTGGGAAACAGTCCCACATTCCTTA
CAGCCAGCAACGGCCCTCTGGACCAGGGCCAATGAACCAGGGACCTCAACAGTCACAGCCACCTTCCCAG
CCACCCCTTACATCTTTACCAGCTCAGCCAACAGCACAGTCTACAAGCCAATTGCAGGTTCAAGCTCTAG
CTCAGCAACAGCAATCCCCTACAAAAGTCATACCAGCTTTGGGGAAAAGCCCGCCTCACCACTCTGGATT
CCAGCAGTATCAACAGGCAGATGCCTCCAAACAGCTGTGGAATCCCCCTCAGGTTCAAAGCCCACTAGGG
AAAATTATGCCTGTGAAACAGTCCTACTACCTTCAGACCCAAGACCCTATAAAACTGTTTGAGCCGTCAT
TGCAACCTCCTGTAATACAGCAGCAGCCTCTAGAGAAAAAAATGAAGCCTTTCCCCATGGAGCCATATAA
CCATAATCCCTCAGAAGTCAAGGTCCCAGAGTTCTACTGGGATTCTTCCTACAGCATGGCCGATAACAGA
GCAGTAATGGCTCAGCAACCAAATATGGACCGCAGGAGCAAACGGTCACCTGGAGTCTTCCGTCCAGAAC
AGGATCCTGTGCCCAGGATGCCATTTGAGGACCCCAAGAGCTCCCCTCTGCTTCCTCCGGACCTGTTAAA
GAGTCTGGCTGCCTTGGAGGAAGAGGAAGAGCTGATCTTTTCTAACCCTCCTGATCTTTACCCAGCTCTG
CTGGGTCCTCTCGCCTCTCTTCCTGGACGAAGCCTCTTTAAATCCTTATTGGAGAAGCCTTCTGAGCTCA
TGTCACATTCATCTTCTTTCCTGTCCCTCACGGGGTTCTCTGTCAATCAGGAAAGATATCCAAACAGCAG
TATGTTCAATGAAGTGTATGGAAAAAACCTGACAACCAGCTCCAAGGCAGAACTGAACCCCTCAGTCGCC
TCCCAGGAAACATCACTGTACTCCCTTTTTGAAGGGACCCCATGGTCTCCATCACTTCCTGCCAGTTCAG
ATCATTCGACACCAGCCAGCCAGTCTCCTCATTCCTCTAACCCAAGCAGCCTGCCCAGTTCTCCTCCAAC
GCATAACCATAATTCTGCTCCATTCTCTAATTTTGGACCCATTGGGACTCCAGATAACAGGGATAGGCGG
CCTGCAGATAGGTGGAAAACTGATAAACCAGCCATGGGTGGTTTTGGTGTTGATTATCTCTCAGCAACGT
CATCATCTGAGAGCAGTTGGCATCAGGCTAGCACTCCGAGTGGCACCTGGACAGGCCACGGCCCCTCCAT
GGAGGATTCCTCTGCTGTCCTCATGGAAAGCCTAAAGTCTATCTGGTCCAGTTCCATGATGCATCCTGGG
CCCTCCGCTCTGGAGCAGTTGTTAATGCAGCAGAAGCAGAAACAGCAGCGGGGACAAGGTGCCATGAACC
CTCCACACTGA

Translation (1146 aa):
MRTENLKSEEHLKSSNIRQAEVLKAEMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWN
HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK
QTHSSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH
LTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPL
REKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGIL
CKCPLQNDSQESNNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPREDDLSNTNAT
PLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVGKL
LFITEIPELILEDPSEAKENLILQETSVVESLATDGSPGLKSVLSTGRNPSNSCDSGEKPVVTFKENIKP
REVNQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPSQTSNSQFIPIHHPGAFPPLPSRPGFPPPTYVI
PPPVAFSMGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQ
PPLTSLPAQPTAQSTSQLQVQALAQQQQSPTKVIPALGKSPPHHSGFQQYQQADASKQLWNPPQVQSPLG
KIMPVKQSYYLQTQDPIKLFEPSLQPPVIQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNR
AVMAQQPNMDRRSKRSPGVFRPEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPAL
LGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSVNQERYPNSSMFNEVYGKNLTTSSKAELNPSVA
SQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSAPFSNFGPIGTPDNRDRR
PADRWKTDKPAMGGFGVDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPG
PSALEQLLMQQKQKQQRGQGAMNPPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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