NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15204.1 Public Mus musculus 1 Rnf152 23 108 98 CCDS HistoryNCBI Gene:320311Re-query CCDS DB by CCDS ID:15204.1Re-query CCDS DB by GeneID:320311See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058688.6 ENSMUSP00000050103.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058688.6Link to Ensembl Protein Viewer:ENSMUSP00000050103.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000058688Re-query CCDS DB by Protein ID:ENSMUSP00000050103
Original member Current member EBI ENSMUST00000172299.1 ENSMUSP00000128632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172299.1Link to Ensembl Protein Viewer:ENSMUSP00000128632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172299Re-query CCDS DB by Protein ID:ENSMUSP00000128632
Original member Current member NCBI NM_001160368.1 NP_001153840.1 Accepted alive Link to Nucleotide Sequence:NM_001160368.1Link to Protein Sequence:NP_001153840.1Re-query CCDS DB by Nucleotide ID:NM_001160368Re-query CCDS DB by Protein ID:NP_001153840Link to BLAST:NP_001153840.1
Original member Current member NCBI NM_178779.4 NP_848894.1 Accepted alive Link to Nucleotide Sequence:NM_178779.4Link to Protein Sequence:NP_848894.1Re-query CCDS DB by Nucleotide ID:NM_178779Re-query CCDS DB by Protein ID:NP_848894Link to BLAST:NP_848894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153840.1 203 Q8BG47 203 100% 0 0
NP_848894.1 203 Q8BG47 203 100% 0 0

Chromosomal Locations for CCDS 15204.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 105284219 105284830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGAGACACTCTCCCAGGATTCCCTGTTGGAATGTCAGATCTGTTTTAATTATTACAGCCCCCGACGAA
GGCCCAAGTTGTTGGATTGCAAGCACACCTGCTGCTCGGTGTGCCTCCAGCAGATGAGGACCAGCCAGAA
GGACGTAAGGTGCCCCTGGTGCCGTGGCATCACCAAATTGCCCCCGGGCTTCTCTGTATCACAACTGCCC
GATGACCCAGAGGTCTTGGCAGTCATTGCCATACCACACACTTCCGAGCATACCCCAGTCTTCATCAAAC
TTCCAAGCAATGGGTGCTACATGCTGCCCCTGCCCATCTCTAAGGAGCGTACACTCCTGCCGGGAGACAT
GGGCTGCCGCCTGCTGCCAGGGAGCCAGCAGAAGTCTCTCACCGTGGTGACCATCCCTGCAGAACAGCAG
CCCCTGCAGGGTGGAGCTCCCCCGGAGGCTGTGGAGGAGGAGCCTGACAGAAGGGGCGTGGTGAAGAGCT
CCACATGGTCTGGCGTGTGCACTGTCATCCTGGTGGCCTGTGTTTTGGTCTTCCTCCTGGGCATTGTGCT
ACACAACATGTCCTGCATCTCTAAGCGCTTCACTGTGATATCCTGTGGTTGA

Translation (203 aa):
METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGITKLPPGFSVSQLP
DDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERTLLPGDMGCRLLPGSQQKSLTVVTIPAEQQ
PLQGGAPPEAVEEEPDRRGVVKSSTWSGVCTVILVACVLVFLLGIVLHNMSCISKRFTVISCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH