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Report for CCDS15537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15537.1 Public Mus musculus 1 Or6n1 23 108 98 CCDS HistoryNCBI Gene:258717Re-query CCDS DB by CCDS ID:15537.1Re-query CCDS DB by GeneID:258717See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060693.4 ENSMUSP00000051323.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060693.4Link to Ensembl Protein Viewer:ENSMUSP00000051323.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060693Re-query CCDS DB by Protein ID:ENSMUSP00000051323
Original member Current member EBI ENSMUST00000216346.2 ENSMUSP00000149257.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216346.2Link to Ensembl Protein Viewer:ENSMUSP00000149257.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216346Re-query CCDS DB by Protein ID:ENSMUSP00000149257
Original member Current member NCBI NM_146722.2 NP_666933.2 Accepted alive Link to Nucleotide Sequence:NM_146722.2Link to Protein Sequence:NP_666933.2Re-query CCDS DB by Nucleotide ID:NM_146722Re-query CCDS DB by Protein ID:NP_666933Link to BLAST:NP_666933.2

Chromosomal Locations for CCDS 15537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174089042 174089980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGGCACTGGAAACTGGAGCCAAGTAATAGAATTCATCATTTTGGGCTTCCCTCACTTCCAAGGTGTCC
AGATTTACCTGTTTTTCTTGCTGCTTTCCATTTACTTCACTACTATATTGGGAAACTTGCTGATATTCTT
GGTGGTCTACCTGGACTCTCGGCTCCACACGCCCATGTACAGATTTGTCAGCATCCTTTCCTTCTTGGAG
CTGGGCTACACAGCTGCCACCATTCCCAAGATGCTAGCGAACTTGCTGAGTGAGAAGAAGACGATTTCCT
TTTCTGGATGTCTCCTACAGATCTACTTCTTTCACTCTCTTGGAGCTACTGAGTGCTACCTCCTGACAGC
AATGGCATATGACAGGTACTTAGCCATTTGCAGGCCTCTCCACTATCCCACCCTAATGACCCAGTCACTT
TGTATCAAGATTGCCATTGGTTGCTGGTTGGGAGGCTTGGCTGGGCCAGTGGTGGAAATTTCCTTGGTGT
CTCGTCTCCCTTTTTGTGGCCCCAATCACATTCAGCACATTTTTTGTGATTTCCCTCCTGTGCTGAGTTT
GGCTTGTACTGACACATCAGTCAATGTCCTAGTAGATTTTATTATAAACTCCTGTAAGATCCTAGCCACC
TTCCTGCTGATCCTCAGCTCCTACTTGCAGATAATCCGCACAGTTCTCAAGATTCCCTCTGCTGCAGGCA
AGAAGAAGGCCTTCTCCACGTGTGCCTCCCATCTCACTGTGGTGCTCATCTTCTATGGGAGCATCCTTTT
CATGTATGTGCGACTGAAGAAGAGTTACTCCCTTGACTACGACCGAGCCTTGGCAGTAGTCTACTCTGTG
ATTACTCCCTTTCTCAACCCCTTCATTTATAGCTTGCGCAACAAGGAAATCAAGGAGGCCCTGAAGAGGC
AGCTTATGAGAACAGGAATACTGAGGTGA

Translation (312 aa):
MGTGNWSQVIEFIILGFPHFQGVQIYLFFLLLSIYFTTILGNLLIFLVVYLDSRLHTPMYRFVSILSFLE
LGYTAATIPKMLANLLSEKKTISFSGCLLQIYFFHSLGATECYLLTAMAYDRYLAICRPLHYPTLMTQSL
CIKIAIGCWLGGLAGPVVEISLVSRLPFCGPNHIQHIFCDFPPVLSLACTDTSVNVLVDFIINSCKILAT
FLLILSSYLQIIRTVLKIPSAAGKKKAFSTCASHLTVVLIFYGSILFMYVRLKKSYSLDYDRALAVVYSV
ITPFLNPFIYSLRNKEIKEALKRQLMRTGILR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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