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Report for CCDS17625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17625.1 Public Mus musculus 3 Car14 23 108 98 CCDS HistoryNCBI Gene:23831Re-query CCDS DB by CCDS ID:17625.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036181.14 ENSMUSP00000036983.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036181.14Link to Ensembl Protein Viewer:ENSMUSP00000036983.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036181Re-query CCDS DB by Protein ID:ENSMUSP00000036983
Original member Current member NCBI NM_011797.3 NP_035927.1 Accepted alive Link to Nucleotide Sequence:NM_011797.3Link to Protein Sequence:NP_035927.1Re-query CCDS DB by Nucleotide ID:NM_011797Re-query CCDS DB by Protein ID:NP_035927Link to BLAST:NP_035927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035927.1 337 Q9WVT6 337 100% 0 0

Chromosomal Locations for CCDS 17625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95898146 95898212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95898801 95898885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95898977 95898997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95899224 95899344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95899431 95899588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95899740 95899806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95899931 95900026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95900243 95900385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95901093 95901272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95902111 95902131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95904320 95904374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGTTGTTCTTCGCTCTCCTGTTAAAGGTGACTTGGATCCTGGCTGCAGATGGGGGTCACCACTGGACAT
ATGAAGGCCCACACGGTCAGGACCATTGGCCAACCTCTTATCCTGAGTGTGGAGGCGATGCCCAGTCCCC
CATCAATATCCAGACAGACAGTGTGATATTTGACCCCGATCTGCCTGCTGTACAGCCCCATGGATATGAC
CAGCTTGGGACTGAGCCTTTGGATCTACACAATAATGGCCATACAGTGCAGCTTTCCCTGCCCCCAACCC
TGCACCTGGGTGGACTGCCCCGAAAATACACAGCAGCCCAGCTCCACCTGCACTGGGGTCAGAGAGGATC
CCTCGAGGGATCAGAGCACCAGATCAACAGTGAAGCCACGGCTGCGGAGCTCCACGTGGTTCACTATGAC
TCCCAGTCCTACAGCAGCTTGAGTGAGGCAGCTCAGAAGCCACAGGGCCTGGCTGTCCTAGGCATCCTCA
TTGAGGTGGGCGAGACTGAGAATCCAGCTTATGATCACATTCTGAGTCGTCTACATGAAATAAGATACAA
AGATCAGAAGACCTCTGTGCCTCCCTTCAGCGTGAGAGAGCTGTTCCCCCAACAGCTGGAGCAATTCTTC
CGCTACAACGGCTCACTCACAACTCCCCCCTGCTACCAGAGTGTGCTCTGGACAGTCTTCAACAGAAGGG
CCCAGATTTCAATGGGACAGTTAGAGAAGCTCCAGGAGACATTGTCCTCTACAGAAGAGGACCCCTCTGA
GCCCCTTGTACAGAACTACAGAGTCCCCCAGCCTCTCAACCAGAGGACCATCTTTGCTTCTTTCATCCAA
GCAGGACCACTGTATACCACAGGAGAGATGCTGGGTCTAGGTGTGGGAATCTTGGCTGGATGTCTTTGCC
TTCTGCTGGCTGTTTATTTCATCGCTCAAAAAATTAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGT
TTTCACCTCTGCTCGGGCTACCACAGAGGCGTGA

Translation (337 aa):
MLFFALLLKVTWILAADGGHHWTYEGPHGQDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYD
QLGTEPLDLHNNGHTVQLSLPPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHQINSEATAAELHVVHYD
SQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYKDQKTSVPPFSVRELFPQQLEQFF
RYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQETLSSTEEDPSEPLVQNYRVPQPLNQRTIFASFIQ
AGPLYTTGEMLGLGVGILAGCLCLLLAVYFIAQKIRKKRLGNRKSVVFTSARATTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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