NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15203.1 Public Mus musculus 1 Cdh20 23 108 98 CCDS HistoryNCBI Gene:23836Re-query CCDS DB by CCDS ID:15203.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062528.8 ENSMUSP00000052078.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062528.8Link to Ensembl Protein Viewer:ENSMUSP00000052078.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000062528Re-query CCDS DB by Protein ID:ENSMUSP00000052078
Original member NCBI NM_011800.5 NP_035930.1 Updated not alive Link to Nucleotide Sequence:NM_011800.5Link to Protein Sequence:NP_035930.1Re-query CCDS DB by Nucleotide ID:NM_011800Re-query CCDS DB by Protein ID:NP_035930
Current member NCBI NM_011800.6 NP_035930.1 Accepted alive Link to Nucleotide Sequence:NM_011800.6Link to Protein Sequence:NP_035930.1Re-query CCDS DB by Nucleotide ID:NM_011800Re-query CCDS DB by Protein ID:NP_035930Link to BLAST:NP_035930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035930.1 801 Q9Z0M3 801 100% 0 0

Chromosomal Locations for CCDS 15203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 104934097 104934342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104941032 104941326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104942098 104942217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104945192 104945359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104947324 104947511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104953829 104954082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104970821 104970957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104974994 104975115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104978980 104979097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104984671 104984922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 104993880 104994385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGTGGACTACGGGTAGAATGAGCAATGCAAAGAGTTGGCTTGGACTTGGCACATCCTTGTACTTCTGGG
CGCTGATGGACCTCACAGCCACTGTTCTCTCCAGCACTCCAATGCCAGAAGTTGAATTAGAAACACTCTT
CTCTGGAAGGTCGCAGTCACATCAGCGAAGCAAGAGGAGCTGGGTTTGGAATCAGTTTTTTGTCCTGGAA
GAGTACACTGGGACTGACCCTTTGTATGTCGGCAAGCTTCATTCAGACATGGACAGAGGAGATGGATCCA
TCAAATACATCCTTTCAGGAGAAGGAGCAGGCATCGTGTTTACCATTGATGACACCACTGGAGACATCCA
TGCCATTCAGAGGCTCGACCGAGAAGAAAGAGCCCAATATACTCTAAGGGCTCAAGCCCTAGACAGGAGA
ACAGGCCGGCCAATGGAGCCAGAATCAGAGTTCATTATCAAAATCCAAGATATCAATGACAACGAGCCCA
AGTTCCTGGATGGACCTTACATCGCCACTGTGCCAGAAATGTCACCAGTAGGTACATCTGTTATCCAAGT
GACAGCCACAGATGCTGATGACCCAACCTATGGCAACAGTGCCCGGGTAGTGTACAGCATTCTCCAGGGC
CAGCCATATTTTTCTGTGGACTCCAAAACAGGTGTAATCAGAACAGCCCTTATGAACATGGACAGAGAAG
CCAAGGAGTACTATGAAGTGATTATCCAAGCCAAAGATATGGGAGGGCAACTTGGAGGATTGGCTGGGAC
CACAACAGTCAACATCACTCTCTCAGATGTCAATGATAACCCACCCCGATTTCCACAGAAACATTATCAG
ATGAGTGTGCTAGAATCTGCTCCAATTAGCTCTACTGTGGGCAGAGTGTTTGCCAAGGACCTGGATGAAG
GAATCAATGCAGAGATGAAGTATACCATTGTGGATGGAGATGGTGCAGATGCTTTTGATATTAATACAGA
CCAAAACTTCCAAGTTGGCATCATAACTGTGAAGAAGCCCCTGAGTTTTGAAAGCAAGAAAAGCTACACC
CTGAAGGTGGAAGGATCCAATCCTCACCTAGAGATGCGTTTTCTGAACCTTGGCCCATTTCAGGACACAA
CAACAGTGCACATCAGTGTGGAGGATGTGGACGAGCCCCCTGTGTTTGAGCCTGGCTTTTATTTTGTGGA
GGTGCCAGAGGATGTGACAATTGGAACAACCATACAGATCATTTCTGCTAAGGACCCAGACGTAACCAAC
AACTCAATCAGGTACTCCATTGACAGAGGCAGCGACCCGGGAAGATTTTTCTATGTGGACATTACAACAG
GTGCTCTAATGACTGCAAGACCACTAGACAGAGAAGAGTTCTCCTGGCATAATATAACTGTCCTTGCTAT
GGAAATGAACAATCCCTCCCAAGTGGGAAGTGTTGCTGTCACAATCAAAGTCCTCGATGTGAATGACAAC
GCTCCAGAGTTTCCCAGATTCTATGAAGCTTTTATCTGTGAAAATGCCAAAGCCGGACAGCTGATCCAGA
CAGTGAGTGCTGTGGATCAAGATGACCCTCACAATGGCCAACATTTCTACTACAGTTTGGCTCCTGAGGC
TGCTAACAACCCCAACTTCACTGTCAGGGACAACCAAGATAATACTGCTCGGATTCTGACCCGGAGGTCC
GGCTTCCGACAGCAGGAGCAGAGCGTCTTCTACCTGCCCATCCTCATCGCAGACAGCGGCCAGCCCGTCC
TCAGCAGCACCGGCACGCTTACCATTCAAGTGTGCAGCTGCAATGACGATGGCCACGTCATGTCCTGCAG
CCCAGAGGCCTATCTGCTCCCAGTCAGCTTGAGTCGGGGTGCCCTCATCGCCATCCTGGCCTGCATCTTT
GTCCTCTTAGTGTTGGTGCTGCTCATCCTGTCCATGAGGCGACATCGCAAACAACCCTACATCATCGACG
ACGATGAGAACATCCACGAGAACATTGTGCGCTACGACGACGAGGGGGGCGGCGAAGAGGACACAGAGGC
CTTCGACATCGCAGCCATGTGGAACCCGCGCGAGGCGCAGGCAGGCGCCGCCCCCAAGACGCGCCAGGAC
ATGCTCCCCGAGATCGAGAGCCTGTCCCGCTACGTGCCTCAGACCTGCGCGGTCAGCAGCACGGTCCACA
GCTACGTGCTGGCCAAGCTCTACGAGGCCGACATGGACCTGTGGGCCCCGCCCTTCGACTCCCTGCAGAC
CTACATGTTTGAAGGGGACGGCTCTGTGGCCGGCTCGCTCAGCTCCCTGCAGTCAGCCACCTCGGACTCA
GAGCAGAGCTTTGATTTCCTCACGGACTGGGGACCCCGCTTCCGAAAACTGGCAGAACTCTACGGGGCGT
CCGAGGGGCCCGCGCCCTTGTGGTGA

Translation (801 aa):
MWTTGRMSNAKSWLGLGTSLYFWALMDLTATVLSSTPMPEVELETLFSGRSQSHQRSKRSWVWNQFFVLE
EYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRR
TGRPMEPESEFIIKIQDINDNEPKFLDGPYIATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQG
QPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQ
MSVLESAPISSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDQNFQVGIITVKKPLSFESKKSYT
LKVEGSNPHLEMRFLNLGPFQDTTTVHISVEDVDEPPVFEPGFYFVEVPEDVTIGTTIQIISAKDPDVTN
NSIRYSIDRGSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVAVTIKVLDVNDN
APEFPRFYEAFICENAKAGQLIQTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRS
GFRQQEQSVFYLPILIADSGQPVLSSTGTLTIQVCSCNDDGHVMSCSPEAYLLPVSLSRGALIAILACIF
VLLVLVLLILSMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQD
MLPEIESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDS
EQSFDFLTDWGPRFRKLAELYGASEGPAPLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH