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Report for CCDS36420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36420.1 Public Mus musculus 12 Grhl1 23 108 98 CCDS HistoryNCBI Gene:195733Re-query CCDS DB by CCDS ID:36420.1Re-query CCDS DB by GeneID:195733See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020985.8 ENSMUSP00000020985.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020985.8Link to Ensembl Protein Viewer:ENSMUSP00000020985.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020985Re-query CCDS DB by Protein ID:ENSMUSP00000020985
Original member Current member NCBI NM_145890.2 NP_665897.2 Accepted alive Link to Nucleotide Sequence:NM_145890.2Link to Protein Sequence:NP_665897.2Re-query CCDS DB by Nucleotide ID:NM_145890Re-query CCDS DB by Protein ID:NP_665897Link to BLAST:NP_665897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665897.2 536 Q921D9-2 536 99.6269% 0 2

Chromosomal Locations for CCDS 36420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 24580749 24580780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24581328 24581718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24582885 24582961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24584305 24584461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24584834 24584945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24586056 24586150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24602908 24603066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24608029 24608080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24608433 24608572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24609704 24609741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24611823 24611914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24612155 24612240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24614395 24614459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24615818 24615932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGTTCTCCTTGATGATGAACTGTGTGACCTAAACAGCATACCAAATGTGACGGAGCAGCCCCTCATTT
CTGCTGGAGAAAACAGGGTGCAAGTGCTGAAAAACGTGCCCTTCAACATCGTCCTCCCCCATAGCAACCA
GCTGGGCATTGATAAGAGAGGCCATCTGACAGCTCCCGATACAACAGTCACTGTCTCCATAGCAACCATG
CCTACCCACTCCATCAAGACAGAAATCCAGCCGCACGGCTTTGCTGTGGGAATCCCACCAGCCGTGTACC
ACTCTGAGCCCACCGAACGTGTGGTGGTTTTTGACCGGAGCCTCAGCACTGATCAGTTCAGCTCTGGCAC
TCAGCCCCCCAATGCTCAGCGGAGGACTCCAGACTCCACCTTCTCCGAGACCTTCAAGGAGGGCGTTCAG
GAGGTTTTCTTCCCCTCGGAACTCAGCCTTCGGATGCCGGGCATGAATTCAGAGGACTATGTCTTTGACA
ATGTTTCTGGGAACAACTTTGAGTATACCCTGGAAGCCTCCAAGTCACTGCGGCAGAAGCAAGGGGACAG
CACTATGACATACCTGAATAAAGGCCAGTTCTATCCTGTCACCTTAAAGGAAGGAAGCAGCAATGAAGGG
ATTCACCACCCTATCAGCAAAGTTCGAAGTGTGATCATGGTGGTTTTTGCTGAAGACAAAAGCAGAGAAG
ACCAGCTGAGACACTGGAAGTACTGGCACTCCCGTCAGCACACGGCCAAACAGAGGTGCATTGACATTGC
TGACTACAAAGAAAGCTTCAACACTATCAGCAACATTGAGGAGATAGCTTATAACGCCATTTCCTTCACG
TGGGACATCAATGATGAGGCAAAGGTCTTCATCTCTGTGAACTGCTTGAGCACAGATTTCTCTTCTCAGA
AGGGTGTGAAGGGCTTGCCACTCAACATTCAAATCGACACATACAGCTATAACAACCGCAGCAACAAGCC
GGTTCACCGGGCCTACTGCCAGATAAAGGTCTTCTGCGACAAGGGAGCTGAAAGGAAAATTCGGGATGAA
GAACGAAAACAGAGCAAGAGAAAAGTGTCTGACGTTAAAGTGCAGCTGCTTCCCTCGCACAAACGGACAG
ACATCACAGTGTTCAAGCCCTTCCTGGACCTCGACACTCAGCCTGTCCTCTTCATTCCGGACGTGCATTT
TACCAACCTGCAGCGGGGCAGTCATGTTCTTTCCCTCCCCTCTGAAGAACTGGAAGGTGAAGGCTCTGTC
TTGAAAAGAGGGCCATTCGGAACCGAAGATGACTTTGGAGTTCCTCCTCCTGCTAAGCTGACTCGGACAG
AAGAACCCAAGAGAGTGCTGCTCTATGTCCGAAAGGAATCAGAAGAAGTCTTCGACGCCCTGATGCTCAA
GACGCCGTCTTTGAAGGGCCTGATGGAGGCAATTTCAGACAAGTATGATGTCCCCCATGACAAGATTGGG
AAAATATTTAAGAAGTGCAAAAAAGGGATCCTCGTGAACATGGACGACAACATTGTGAAGCACTACTCCA
ATGAGGACACCTTCCAGCTGCAGATAGAGGAAGCCGGCGGCTCGTACAAGCTCACCCTGACAGAGATTTA
A

Translation (536 aa):
MVLLDDELCDLNSIPNVTEQPLISAGENRVQVLKNVPFNIVLPHSNQLGIDKRGHLTAPDTTVTVSIATM
PTHSIKTEIQPHGFAVGIPPAVYHSEPTERVVVFDRSLSTDQFSSGTQPPNAQRRTPDSTFSETFKEGVQ
EVFFPSELSLRMPGMNSEDYVFDNVSGNNFEYTLEASKSLRQKQGDSTMTYLNKGQFYPVTLKEGSSNEG
IHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISNIEEIAYNAISFT
WDINDEAKVFISVNCLSTDFSSQKGVKGLPLNIQIDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDE
ERKQSKRKVSDVKVQLLPSHKRTDITVFKPFLDLDTQPVLFIPDVHFTNLQRGSHVLSLPSEELEGEGSV
LKRGPFGTEDDFGVPPPAKLTRTEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIG
KIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIEEAGGSYKLTLTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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