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Report for CCDS30169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30169.1 Public Mus musculus X Slitrk2 23 108 98 CCDS HistoryNCBI Gene:245450Re-query CCDS DB by CCDS ID:30169.1Re-query CCDS DB by GeneID:245450See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036043.4 ENSMUSP00000044094.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036043.4Link to Ensembl Protein Viewer:ENSMUSP00000044094.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000036043Re-query CCDS DB by Protein ID:ENSMUSP00000044094
Original member Current member EBI ENSMUST00000166241.1 ENSMUSP00000130057.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166241.1Link to Ensembl Protein Viewer:ENSMUSP00000130057.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166241Re-query CCDS DB by Protein ID:ENSMUSP00000130057
Original member Current member NCBI NM_001161431.1 NP_001154903.1 Accepted alive Link to Nucleotide Sequence:NM_001161431.1Link to Protein Sequence:NP_001154903.1Re-query CCDS DB by Nucleotide ID:NM_001161431Re-query CCDS DB by Protein ID:NP_001154903Link to BLAST:NP_001154903.1
Original member Current member NCBI NM_198863.2 NP_942563.2 Accepted alive Link to Nucleotide Sequence:NM_198863.2Link to Protein Sequence:NP_942563.2Re-query CCDS DB by Nucleotide ID:NM_198863Re-query CCDS DB by Protein ID:NP_942563Link to BLAST:NP_942563.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154903.1 846 Q810C0 846 100% 0 0
NP_942563.2 846 Q810C0 846 100% 0 0

Chromosomal Locations for CCDS 30169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 66653905 66656445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2541 nt):
ATGCTGAGCGGCGTTTGGTTCCTCAGTGTGTTAACAGTGGCCGGGATCTTACAGACCGAGAGTCGCAAAA
CTGCCAAAGACATTTGCAAGATCCGCTGCTTGTGCGAAGAGAAGGAAAACGTACTGAATATTAACTGTGA
AAACAAAGGATTTACAACTGTCAGTTTGCTTCAACCCCCCCAGTATCGCATCTATCAGCTGTTTCTCAAC
GGAAACCTCTTGACCAGACTGTATCCAAATGAGTTTGTCAATTATTCAAATGCGGTGACTCTTCATCTAG
GTAACAATGGGCTGCAGGAGATCCGACCTGGGGCATTTAGTGGTCTGAAAACTCTCAAAAGACTGCACCT
CAATAACAACAAACTGGAGGTATTGCGAGAGGACACTTTTCTAGGCCTAGAGAGTCTGGAGTACCTCCAA
GCTGACTACAATTACATCAGCACCATCGAGGCAGGGGCATTCAGCAAACTGAATAAGCTGAAAGTACTCA
TCCTGAATGACAACCTTTTGCTGTCTTTGCCCAGTAATGTGTTTCGGTTTGTCCTGCTGACTCACTTAGA
CCTGAGGGGGAACAGGTTGAAAGTAATGCCTTTTGCTGGTGTCCTTGAACATATTGGAGGAATCATGGAA
ATTCAGCTGGAAGAAAACCCGTGGAATTGCACCTGTGACTTACTTCCTCTCAAGGCATGGCTGGACACCA
TTACTGTTTTTGTGGGGGAGATTGTCTGTGAAACCCCTTTCAGGTTACATGGGAAAGATGTGACCCAGCT
GACCAGACAAGACCTCTGTCCCAGAAAAAGTGCAAGTGGTGATTCTAGTCAGAGGAGCAGCCATTCAGAC
ACACATGTTCAAAGGCTGACCCCTACAACAAATCCTGCTCTCAACCCAACCAGAGCTCCAAAAGCCAGCC
GGCCACCCAAAATGAGAAATCGTCCGACTCCTCGAGTGACTGTGTCAAAAGACCGGCAGAGCTTTGGCCC
GATCATGGTGTACCAGACCAAGTCCCCCGTGGCCCTCACCTGTCCCAGCAGCTGTGTCTGTACTTCTCAG
AGCTCAGACAATGGTCTAAATGTGAATTGCCAAGAAAGGAAGTTCACTAACATCTCTGACCTACAGCCCA
AACCTACCAGTCCAAAGAAACTCTACCTAACAGGGAACTATCTCCAAACAGTCTATAAGAATGACCTCTT
AGAATACAGTTCACTGGATTTGTTGCATTTAGGAAACAACAGGATTGCAGTCATTCAGGAAGGTGCCTTT
ACAAACCTGACCAGTTTACGAAGACTTTATCTGAATGGCAATTACCTTGAAGTGCTGTATCCTTCTATGT
TTGATGGACTGCAGAGCTTGCAGTATCTCTATTTAGAGTATAATGTCATTAAGGAAATTAAGCCTCTGAC
CTTTGATGCTTTGATTAACCTCCAGCTCCTGTTTCTGAATAACAACCTGCTGAGGTCCTTACCTGATAAT
ATATTTGGGGGCACAGCCCTCACCAGGCTGAATCTGAGAAACAATCATTTTTCTCACCTGCCTGTGAAAG
GGGTCCTGGACCAGCTTCCTGCTTTTATCCAGATAGATCTGCAAGAGAACCCATGGGACTGCACCTGTGA
CATCATGGGGCTAAAGGACTGGACCGAACATGCCAATTCTCCTGTCATCATCAATGAGGTGACTTGTGAG
TCTCCCGCTAAGCATGCAGGGGAGATACTGAAATTCCTGGGAAGGGAGGCTATTTGTCCAGAAAATCCTA
ACCTGTCAGATGGGACTATTTTGTCAATGAATCACAACACAGACACACCTAGATCACTTAGTGTGTCTCC
TAGTTCTTACCCCGAACTACACACTGAAGTTCCACTCTCCGTTTTAATTTTAGGATTGCTTGTGGTTTTT
ATCCTGTCTGTCTGTTTTGGGGCGGGGTTGTTCGTCTTTGTTCTGAAGCGTCGAAAGGGAGTGCCAAATG
TTCCCAGGAATGCCACCAACTTAGATGTAAGTTCCTTCCAGTTACAATATGGGTCTTACAACACCGAGAC
TAATGATAAAGCTGATGGCCACGTCTATAACTACATTCCTCCACCTGTGGGTCAGATGTGCCAAAACCCC
ATCTACATGCAGAAGGAAGGAGACCCAGTGGCCTATTACCGAAATCTGCAGGACTTCAGCTATGGCAACC
TGGAGGAAAAAAAAGAAGAACCTGCCACACTTGCTTACACAATAAGTGCCACTGAGTTGCTAGAAAAACA
GGCCACACCAAGAGAGCCTGAGCTGCTGTATCAGAATATTGCTGAGCGAGTTAAAGAACTTCCCAGTGCA
GGCCTAGTCCACTATAACTTTTGTACCTTACCTAAAAGGCAGTTTGCCCCTTCATATGAATCTCGACGCC
AAAACCAAGACAGAATCAATAAAACCGTTTTATATGGGACTCCCAGAAAATGCTTTGTGGGGCAGTCAAA
GCCAGACCACCCTTTACTGCAAGCTAAACCGCAATCGGAACCAGACTACCTCGAAGTTCTGGAAAAACAA
ACTGCAATCAGTCAGCTGTGA

Translation (846 aa):
MLSGVWFLSVLTVAGILQTESRKTAKDICKIRCLCEEKENVLNINCENKGFTTVSLLQPPQYRIYQLFLN
GNLLTRLYPNEFVNYSNAVTLHLGNNGLQEIRPGAFSGLKTLKRLHLNNNKLEVLREDTFLGLESLEYLQ
ADYNYISTIEAGAFSKLNKLKVLILNDNLLLSLPSNVFRFVLLTHLDLRGNRLKVMPFAGVLEHIGGIME
IQLEENPWNCTCDLLPLKAWLDTITVFVGEIVCETPFRLHGKDVTQLTRQDLCPRKSASGDSSQRSSHSD
THVQRLTPTTNPALNPTRAPKASRPPKMRNRPTPRVTVSKDRQSFGPIMVYQTKSPVALTCPSSCVCTSQ
SSDNGLNVNCQERKFTNISDLQPKPTSPKKLYLTGNYLQTVYKNDLLEYSSLDLLHLGNNRIAVIQEGAF
TNLTSLRRLYLNGNYLEVLYPSMFDGLQSLQYLYLEYNVIKEIKPLTFDALINLQLLFLNNNLLRSLPDN
IFGGTALTRLNLRNNHFSHLPVKGVLDQLPAFIQIDLQENPWDCTCDIMGLKDWTEHANSPVIINEVTCE
SPAKHAGEILKFLGREAICPENPNLSDGTILSMNHNTDTPRSLSVSPSSYPELHTEVPLSVLILGLLVVF
ILSVCFGAGLFVFVLKRRKGVPNVPRNATNLDVSSFQLQYGSYNTETNDKADGHVYNYIPPPVGQMCQNP
IYMQKEGDPVAYYRNLQDFSYGNLEEKKEEPATLAYTISATELLEKQATPREPELLYQNIAERVKELPSA
GLVHYNFCTLPKRQFAPSYESRRQNQDRINKTVLYGTPRKCFVGQSKPDHPLLQAKPQSEPDYLEVLEKQ
TAISQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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