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Report for CCDS17523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17523.1 Public Mus musculus 3 Jtb 23 108 98 CCDS HistoryNCBI Gene:23922Re-query CCDS DB by CCDS ID:17523.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17523.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029546.14 ENSMUSP00000029546.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029546.14Link to Ensembl Protein Viewer:ENSMUSP00000029546.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029546Re-query CCDS DB by Protein ID:ENSMUSP00000029546
Original member Current member NCBI NM_206924.2 NP_996807.1 Accepted alive Link to Nucleotide Sequence:NM_206924.2Link to Protein Sequence:NP_996807.1Re-query CCDS DB by Nucleotide ID:NM_206924Re-query CCDS DB by Protein ID:NP_996807Link to BLAST:NP_996807.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996807.1 146 O88824 146 100% 0 0

Chromosomal Locations for CCDS 17523.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90231958 90232040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90232195 90232232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90232429 90232511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90233923 90234002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90235383 90235539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGCTCGCGGGCGCGGGGAGGCGTGGCCTCCCCCGGGCCGGCCACCTCTGTTGGCTGCTGTGCGCTTTCA
CCTTAAAACTCTGCGAGGCAGAGGCTCCGGTGCGCGAGGAGAAGCTATCAGTGAGCACTTCAACTTCGCC
ATGTTGGTTGGCAGAAGAGTTTGTGGTGACTGAAGAGTGTACTCCGTGTTCTAACTTCCAGATTAAAACA
ACACCTGAGTGTGGTTCTACAGGGTATGTGGAAAAAATCACATGCAGCTCATCTAAGAGGAATGAATTCA
AAAGCTGCCGTTCGGCTCTACTGGAACAACACTTATTCTGGAAATTTGAAGGCGTTGTGGTGGCTGTAGC
TTTAGTCTTCGCCTGCCTTGTCATCGTTCGTCAGCGACAACTGGACAGAAAGGCTCTTGAAAAAGTCAGG
AAGCAAATTGAGTCCATATAG

Translation (146 aa):
MLAGAGRRGLPRAGHLCWLLCAFTLKLCEAEAPVREEKLSVSTSTSPCWLAEEFVVTEECTPCSNFQIKT
TPECGSTGYVEKITCSSSKRNEFKSCRSALLEQHLFWKFEGVVVAVALVFACLVIVRQRQLDRKALEKVR
KQIESI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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