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Report for CCDS20055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20055.1 Public Mus musculus 6 Kel 23 108 98 CCDS HistoryNCBI Gene:23925Re-query CCDS DB by CCDS ID:20055.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20055.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031899.13 ENSMUSP00000031899.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031899.13Link to Ensembl Protein Viewer:ENSMUSP00000031899.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031899Re-query CCDS DB by Protein ID:ENSMUSP00000031899
Original member Current member NCBI NM_032540.3 NP_115929.3 Accepted alive Link to Nucleotide Sequence:NM_032540.3Link to Protein Sequence:NP_115929.3Re-query CCDS DB by Nucleotide ID:NM_032540Re-query CCDS DB by Protein ID:NP_115929Link to BLAST:NP_115929.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115929.3 713 Q9EQF2 713 100% 0 0

Chromosomal Locations for CCDS 20055.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41686447 41686608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41687522 41687617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41687945 41688114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41688323 41688390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41688539 41688649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41688792 41688892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41689277 41689354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41689540 41689638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41690750 41690860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41697349 41697478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41698300 41698448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41698888 41699076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41699164 41699226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41701913 41702059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41702360 41702484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41702912 41703088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41703359 41703500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41703762 41703785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGGGACCTCCCTGGAGCCAGGAGAGTTCTCCAGAAGAGAGGCTTCCCACTGAATGGAGCAGACAGTTGA
CAAGAGCCAGATGGGTGCTGCTAGCTGTCCTGCTCTGTGGCCTGCTCCTTGGTTCTTCTATGCTTTGGTT
TTACATCTTCCGGAACTGTGGTCCTTGTCCATGTGAGACACCTGTGTGTATGGAGCTCCTGGACCATTAC
CTGGCCTCTGGAAACAGAAGCGTGGCCCCCTGCACTGACTTTTTCAGCTTTGCCTGTGAAAAAGCCAATG
GGACCAGTGACTCTTTCCAAGCACTTACAGAAGAGAACAAGAGCCGACTGTGGAGACTGTTGGAGGCCCC
AGGGTCCTGGCACCTAGGATCTGGAGAGGAGAAAGCCTTCCAATTTTATAACTCCTGCATGGACACAGAT
GCCATTGAAGCTTCAGGGTCTGGTCCACTCATACAAATTATTGAAGAGCTTGGAGGCTGGAACATCACTG
GCAACTGGACGTCCTTGGACTTCAACCAAAATCTGAGGCTTCTGATGAGTCAGTATGGCCACTTTCCATT
CTTCCGAGCCTATCTACGACCTCATCCAGCCCCTCCACATACACCAATCATCCAGATAGACCAGCCGGAG
TTTGACATTCTTCTCCAGCAAGAGCAGGAACAGAAGGTCTATGCTCAGATCCTACGGGAATATGTGACAT
ACCTGAATAGGCTGGGAACATTACTGGGGAGTAACCCACAGGAAGCACAACAGCATGCCTCCTGGTCCAT
CGTCTTTACCTCCCGGCTGTTCCAGTTTCTGAGGCCACAGCAGCAGCAGCAGGCACAGGACAAGCTCTTT
CATGTGGTTACTATTGACGAACTGCAGGAAATGGCCCCAGCCATCGACTGGTTATCCTGTTTACAAGCAA
TATTCACACCGATGTCACTGAATTCCTCCCAGACCCTCGTGGTCCATGACCTAGACTACTTGAGAAACAT
GTCACAACTTGTAGAAGAAGGGCTGCTGAATCACAGGGAGAGTATACAGAGCTACATGATCTTGGGGCTG
GTGGATACCCTTTCACCAGCACTGGACACTAAATTCCAGGAGGCACGCAGAGAACTGATCCAGGAACTAC
GGAAACTGAAAGAACGACCACCCCTGCCAGCCTACCCTCGATGGATGAAGTGTGTGGAACAGACGGGAGC
CTTCTTTGAGCCTACTCTGGCAGCTCTGTTTGTTCGTGAAGCTTTTGGCCCAAGCATTCAAAGTGCTGCC
ATGGAATTATTTGCTGAGATAAAGGATGCTGTCATCATACGCCTCAAAAAGCTTTCCTGGATAAGTGAGG
AGACCCAGAAAGAGGCCTTGAACAAGCTTGCCCAACTGCAGGTGGAGATGGGGGCACCAAAACGGGCCGT
GAAGCCTGACATAGCCACACAGGAATATAATGATATACAACTTGGTCCTAGTTTCCTTCAATCTTTCCTG
AGCTGTGTACGATCCCTCCGGGCCAGAAATGTCCAGAGCTTCTTGCAGCCCTTTCCCTACCACAGATGGC
AGAAATCTCCCTGGGAGGTCAATGCTTACTATTCAATATCTGACCATATGGTGGTCTTCCCTGCTGGTCT
TCTCCAACCTCCATTCTTCCACCCTGGCTACCCCAGAGCTGTGAACTTTGGCGCTGCTGGCAGCATCATG
GCCCATGAATTGTTGCATATCTTCTACCAACTCTTACTCCCTGGGGGCTGCCCAGCCTGTGACACCCATG
TCCTACAAGAAGCACTTCTATGCCTGGAGCGCCATTATGCTGCCTTCCCTTTGCCTAGCATATCCTCGTT
CAATGGTTCTCACACACTCCTGGAAAATGCTGCAGACATAGGAGGCGTAGCCATTGCATTCCAGGCATAT
AGCAAGAGGATAGTAGAGCACACTGGGGAGTTGACCCTGCCCAACCTGGATCTTAGCCCCTATCAACTTT
TCTTCCGAAGCTATGCCCAGGTAATGTGTAGGGGGCTGAGCTCACAAGACCCTCAGGACCCTCACAGTCC
TCCAAGCCTTCGAGTCCATGGGCCCCTGAGCAATACTCCAGATTTTGCCAAACATTTTCATTGTCCACGT
GGGACCCTTCTGAATCCCTCTGCCCGCTGCAAGCTCTGGTAA

Translation (713 aa):
MGPPWSQESSPEERLPTEWSRQLTRARWVLLAVLLCGLLLGSSMLWFYIFRNCGPCPCETPVCMELLDHY
LASGNRSVAPCTDFFSFACEKANGTSDSFQALTEENKSRLWRLLEAPGSWHLGSGEEKAFQFYNSCMDTD
AIEASGSGPLIQIIEELGGWNITGNWTSLDFNQNLRLLMSQYGHFPFFRAYLRPHPAPPHTPIIQIDQPE
FDILLQQEQEQKVYAQILREYVTYLNRLGTLLGSNPQEAQQHASWSIVFTSRLFQFLRPQQQQQAQDKLF
HVVTIDELQEMAPAIDWLSCLQAIFTPMSLNSSQTLVVHDLDYLRNMSQLVEEGLLNHRESIQSYMILGL
VDTLSPALDTKFQEARRELIQELRKLKERPPLPAYPRWMKCVEQTGAFFEPTLAALFVREAFGPSIQSAA
MELFAEIKDAVIIRLKKLSWISEETQKEALNKLAQLQVEMGAPKRAVKPDIATQEYNDIQLGPSFLQSFL
SCVRSLRARNVQSFLQPFPYHRWQKSPWEVNAYYSISDHMVVFPAGLLQPPFFHPGYPRAVNFGAAGSIM
AHELLHIFYQLLLPGGCPACDTHVLQEALLCLERHYAAFPLPSISSFNGSHTLLENAADIGGVAIAFQAY
SKRIVEHTGELTLPNLDLSPYQLFFRSYAQVMCRGLSSQDPQDPHSPPSLRVHGPLSNTPDFAKHFHCPR
GTLLNPSARCKLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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