NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27326.1 Public Mus musculus 14 Slitrk6 23 108 98 CCDS HistoryNCBI Gene:239250Re-query CCDS DB by CCDS ID:27326.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078386.3 ENSMUSP00000077492.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078386.3Link to Ensembl Protein Viewer:ENSMUSP00000077492.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078386Re-query CCDS DB by Protein ID:ENSMUSP00000077492
Original member Current member NCBI NM_175499.4 NP_780708.1 Accepted alive Link to Nucleotide Sequence:NM_175499.4Link to Protein Sequence:NP_780708.1Re-query CCDS DB by Nucleotide ID:NM_175499Re-query CCDS DB by Protein ID:NP_780708Link to BLAST:NP_780708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780708.1 840 Q8C110 840 100% 0 0

Chromosomal Locations for CCDS 27326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 110749751 110752273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGAAGCTGTGGACTTATCTCCTTTATCCATCTCTTCTTGCTTGTCTGTCTCTACAGTCCCAGTCACCAA
TGCCCTCAGTCAGAGGCTCTTGCGACACTCTTTGTAATTGTGAGGAGAAAGATGGCATAATGATAATAAA
CTGTGAAGAAAAAGGAATCAATAAATTATCCCAAATCAGTGTGCCACCATCACGACCTTTCCACTTAAGT
TTATTAAATAATGGCTTGACAATGCTTCACACGAACGACTTTTCTGGACTTACCAATGCCCTTTCAATAC
ACCTTGGATTTAACAATATAGCAGACATAGAGACTGGTGCATTTAATGGCCTTGGGCTTCTTAAGCAACT
TCATATCAATCATAATTCTTTGGAAATTCTTAAAGAGGATACCTTCCATGGTTTGGAGAACCTGGAATTC
TTGCAGGCTGATAATAATTTCATTACGATAATTGAACCAAGTGCCTTCAGCAAGCTCAACAGGCTAAAGG
TGTTGATTTTAAATGACAACGCTATTGAGAGTCTTCCTCCAAACATATTTCGATTTGTTCCTTTAACCCA
TCTAGATCTTCGTGGGAACCAGTTGCAAACATTGCCTTATGTTGGCTTTTTAGAACACATTGGCCGGATA
TTGGATCTCCAATTGGAGGACAATAAGTGGGCCTGCAATTGTGAATTGTTGCAGCTAAAAAACTGGCTAG
AAAATATGCCTCCACAATCTATAATTGGTGATGTGATATGCTACAGCCCTCCACCTTTCAAAGGGAGTGT
ACTGAGTCGCCTGAAAAAGGAATCTTTTTGCCCTACTCCACCAGTATACGAAGAGCATGAGGATCCATCA
GGATCTTTGCTGGCCATAACATCTTCAACAAGTGACAGCCGCCTATCAAGCAAGAATACATCCATTTTGA
AACAACCTACCAAAGCACCAGGTTTGATACCATACCTTACAAAGCCATCCACTCAGCTTCCAGTACCTTA
TTGTCCTATCCCTTGCAATTGCAAAGTTCTCTCCCCTTCGGGGCTTCTTATCCACTGTCAGGAGCGCAAT
ATAGAAAGCTTGTCAGATCTACAGCCTCCTCCACACAACCCTAGAAAGCTGATTCTTGCAGGCAACATCA
TTCACACCTTAATGAAGTCTGACCTCACAGACTATTTCACTTTGGAAATGCTTCACTTGGGAAACAACCG
CATTGAAGTTCTGGAAGAAGGATCGTTTATGAATCTGACACGACTCCAGAAGCTTTATCTCAATGGCAAT
CATCTGACCAAACTCAATAAAGGCATGTTCCTTGGTCTCCACAGTCTCGAGTATTTGTATCTTGAGTACA
ATGCGGTAAAGGAAATATTACCAGGGACCTTCAACCCAATGCCTAAACTGAAAGTTCTTTATTTAAATAA
CAATCTCCTTCAAGTTTTACCGGCACATATCTTTTTAGGTATTCCTCTAACTAGAGTAAATCTTAAAACA
AACCAATTCACCCATTTACCTGTAAGCAACATCTTAGATGACCTTGACTTCCTGATACAGATTGACCTTG
AGGATAACCCCTGGGACTGCTCTTGTGACTTGGTTGGATTGCAGCAATGGATCCACAAGCTTGGCAAGGG
CACCATGACTGATGATATCCTCTGCACTTCCCCAGGGCATCTTGACAAGAAAGAATTAAAAGCCCTCAAC
AGTGATCTTCTTTGCCCTGGTTTAGTGAATAATCCTTCCATGCCAACCCAGACTACTTATGTTATTGTCA
CTTCTCCCACAGTGGCGGCAGATACAGCTAGTACACTCTTCAGTTCTCTCACTGATGCTGTGCCCCTGTC
AGTTCTAATATTAGGACTCCTGATTGTGTTCATAACTATTGTATTCTGTGCCGCGGGGATCGTGGTTTTT
GTCCTCCACCGTAGGAGAAGATATAAGAAGAAAAAAGTAGAGGAACAACTGAGAGACAACAGTCCTGTAC
ACTTGCAGTACAGCATGTATGGTCATAAAACAACCCACCATACAACGGAAAGACCCTCTTCCTCTCTCTA
TGAACAACACATGGTGAGCCCAATGGTTCATGTCTACAGAAGTCCATCCTTTGGTCCAAAGCATTTGGAA
GAAGTTGAGGAAAGAAATGATAAAGAAGGAAATGATGCAAAACATCTTCAAAGGAGCCTGTTAGAACGAG
AAAATCATTCACCACTCACAGGTTCAAATATGAAATACAAAACTACAGACCAATCAACAGATTTCATATC
CTTTCAGGATGCAAGCTTATTATATAGGAACATTTTGGAGAAAGAGAGGGAACTTCAGCAACTTGGCATC
ACAGAGTACCTAAGAAAAAATCTTGCTCAGCTCCAGCCAGAGGTGGAGGTTAACTATCCTGGAGCCCACG
AGGAGCTAAAATTAATGGAAACGTTGATGTACTCACGACCAAGGAAGGTGTTGGTAGAACAGACTAAAAA
TGAATACTTTGAGCTCAAAGCTAACTTGCATGCTGAACCCGACTACTTAGAAGTCTTGGAGCAGCAAACA
TAG

Translation (840 aa):
MKLWTYLLYPSLLACLSLQSQSPMPSVRGSCDTLCNCEEKDGIMIINCEEKGINKLSQISVPPSRPFHLS
LLNNGLTMLHTNDFSGLTNALSIHLGFNNIADIETGAFNGLGLLKQLHINHNSLEILKEDTFHGLENLEF
LQADNNFITIIEPSAFSKLNRLKVLILNDNAIESLPPNIFRFVPLTHLDLRGNQLQTLPYVGFLEHIGRI
LDLQLEDNKWACNCELLQLKNWLENMPPQSIIGDVICYSPPPFKGSVLSRLKKESFCPTPPVYEEHEDPS
GSLLAITSSTSDSRLSSKNTSILKQPTKAPGLIPYLTKPSTQLPVPYCPIPCNCKVLSPSGLLIHCQERN
IESLSDLQPPPHNPRKLILAGNIIHTLMKSDLTDYFTLEMLHLGNNRIEVLEEGSFMNLTRLQKLYLNGN
HLTKLNKGMFLGLHSLEYLYLEYNAVKEILPGTFNPMPKLKVLYLNNNLLQVLPAHIFLGIPLTRVNLKT
NQFTHLPVSNILDDLDFLIQIDLEDNPWDCSCDLVGLQQWIHKLGKGTMTDDILCTSPGHLDKKELKALN
SDLLCPGLVNNPSMPTQTTYVIVTSPTVAADTASTLFSSLTDAVPLSVLILGLLIVFITIVFCAAGIVVF
VLHRRRRYKKKKVEEQLRDNSPVHLQYSMYGHKTTHHTTERPSSSLYEQHMVSPMVHVYRSPSFGPKHLE
EVEERNDKEGNDAKHLQRSLLERENHSPLTGSNMKYKTTDQSTDFISFQDASLLYRNILEKERELQQLGI
TEYLRKNLAQLQPEVEVNYPGAHEELKLMETLMYSRPRKVLVEQTKNEYFELKANLHAEPDYLEVLEQQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH