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Report for CCDS23881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23881.1 Public Mus musculus 10 Lrrc20 23 108 98 CCDS HistoryNCBI Gene:216011Re-query CCDS DB by CCDS ID:23881.1Re-query CCDS DB by GeneID:216011See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049242.8 ENSMUSP00000048042.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049242.8Link to Ensembl Protein Viewer:ENSMUSP00000048042.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049242Re-query CCDS DB by Protein ID:ENSMUSP00000048042
Original member Current member NCBI NM_153542.1 NP_705770.1 Accepted alive Link to Nucleotide Sequence:NM_153542.1Link to Protein Sequence:NP_705770.1Re-query CCDS DB by Nucleotide ID:NM_153542Re-query CCDS DB by Protein ID:NP_705770Link to BLAST:NP_705770.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705770.1 184 Q8CI70 184 100% 0 0

Chromosomal Locations for CCDS 23881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61482401 61482482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61527060 61527209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61548048 61548215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61580130 61580284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGCTGAGGAAGATGGGGGAGGCCGTGGCCAGAGTTGCGAGGAAGGTCAATGAGACTGTGGAAAGCGGCT
CAGATACCCTGGACCTGGCCGACTGCAAGCTTGTTTCTTTCCCCATCTGCATCTACAAGGTCCTGAGGAA
CGTCTCTGATCAGATCCATCTCATCACGCTGGCTAACAATGAACTCAAGTCCCTCACCAGCAAGTTCATG
ACCACCTTCAATCAGCTTCGAGAGCTACGCCTGGAGGGCAACTACCTCTTTCGACTCCCCAATGAGGTCA
GCAGCCTGCAGCACCTCAGGGCCATTGACCTGTCCCGGAACCAGTTTCAAGACTTCCCAGAGCAGCTGAC
CACCTTGCCTGCACTGGAGACTATCAACCTGGAGGAGAATGAGATAGTGGATGTTCCGGTGGAGAAGCTG
GCTGCCATGCCAGCTCTGCGAGTCATCAACCTGCGCCTCAACCCCCTGAGCGCCGACGTGCGTGTGATTG
CCCCACCGCTCATCAAGTTTGATATGCTCATGTCTCCAGAGGATACGCGGGCCCCTCCGCCTTAG

Translation (184 aa):
MLRKMGEAVARVARKVNETVESGSDTLDLADCKLVSFPICIYKVLRNVSDQIHLITLANNELKSLTSKFM
TTFNQLRELRLEGNYLFRLPNEVSSLQHLRAIDLSRNQFQDFPEQLTTLPALETINLEENEIVDVPVEKL
AAMPALRVINLRLNPLSADVRVIAPPLIKFDMLMSPEDTRAPPP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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