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Report for CCDS18556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18556.1 Public Mus musculus 4 Or13p10 23 108 98 CCDS HistoryNCBI Gene:18363Re-query CCDS DB by CCDS ID:18556.1Re-query CCDS DB by GeneID:18363See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102666.4 ENSMUSP00000099727.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102666.4Link to Ensembl Protein Viewer:ENSMUSP00000099727.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102666Re-query CCDS DB by Protein ID:ENSMUSP00000099727
Original member Current member EBI ENSMUST00000213189.2 ENSMUSP00000149043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213189.2Link to Ensembl Protein Viewer:ENSMUSP00000149043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213189Re-query CCDS DB by Protein ID:ENSMUSP00000149043
Original member Current member EBI ENSMUST00000217013.1 ENSMUSP00000149687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217013.1Link to Ensembl Protein Viewer:ENSMUSP00000149687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217013Re-query CCDS DB by Protein ID:ENSMUSP00000149687
Original member Current member NCBI NM_146315.2 NP_666427.2 Accepted alive Link to Nucleotide Sequence:NM_146315.2Link to Protein Sequence:NP_666427.2Re-query CCDS DB by Nucleotide ID:NM_146315Re-query CCDS DB by Protein ID:NP_666427Link to BLAST:NP_666427.2

Chromosomal Locations for CCDS 18556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118665519 118666466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCAGGACTTCCTCTGGAGAAACCGCAGCTCTCTTACCGAGTTTGTCCTTCTAGGATTCTCTAGTAACA
CACAGATAAATGGCATTCTGTTTGGCATCTTTCTTCTCCTCTACCTCACCACCCTCCTAGGCAATGGGCT
CATTATCACCTTGATACACATGGATTCCCGCCTCCACACACCCATGTACTTTTTCCTCAGTGTCTTATCC
ATTCTGGATATGGGCTATGTCACCACCACAGTGCCCCAGATGCTGGTACATCTGGTCTGTAAGAAGAAGA
CCATATCCTATGTTGGATGTGTGGCTCAGATGTACATCTTCCTGATGCTGGGAATCACCGAGTCTTGGCT
GTTTGCAATCATGGCCTATGATAGGTATGTGGCCATTTGCCATCCCCTCAGATACAAAGTCATCATGAGT
CCTTTGCTGCGTGGGTCACTGGTAGCCTTCTGTGGGTTCTGGGGTATCACCTGTGCCCTGATATATACTG
TTTCTGCTATGATTCTTCCCTACTGTGGCCCCAATGAGATCAACCACTTCTTCTGTGAAGTGCCTGCTGT
CCTGAAGCTGGCCTGCGCAGACACCTCTCTCAATGACCAGGTAGACTTCATCCTAGGCTTTATCCTTCTT
TTGGTCCCACTCTCCCTCATCATTGTTGTCTACATCAATATCTTTGCTGCTATCTTGAGAATCCGTTCAA
CTCAAGGGAGGATCAAGGCCTTCTCCACCTGTGTGTCCCACATCATTGTGGTCACCATGTTCTCCATCCC
GTGTATGGTTATGTATATGAGGCCTGGCTCTGAGTCCTCCCCAGAAGAGGACAAGAAGTTGGCTCTCTTC
TACAACGTCATCTCTGCCTTCCTCAACCCCATCATCTACAGCCTTCGTAATAAAGATGTGAAAAGGGCTT
TCCTCAAGGTAGTGGGCAGCAGAAAAGGGTCAGAGTGA

Translation (315 aa):
MQDFLWRNRSSLTEFVLLGFSSNTQINGILFGIFLLLYLTTLLGNGLIITLIHMDSRLHTPMYFFLSVLS
ILDMGYVTTTVPQMLVHLVCKKKTISYVGCVAQMYIFLMLGITESWLFAIMAYDRYVAICHPLRYKVIMS
PLLRGSLVAFCGFWGITCALIYTVSAMILPYCGPNEINHFFCEVPAVLKLACADTSLNDQVDFILGFILL
LVPLSLIIVVYINIFAAILRIRSTQGRIKAFSTCVSHIIVVTMFSIPCMVMYMRPGSESSPEEDKKLALF
YNVISAFLNPIIYSLRNKDVKRAFLKVVGSRKGSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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