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Report for CCDS18270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18270.1 Public Mus musculus 4 Trim32 23 108 98 CCDS HistoryNCBI Gene:69807Re-query CCDS DB by CCDS ID:18270.1Re-query CCDS DB by GeneID:69807See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050850.13 ENSMUSP00000062277.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050850.13Link to Ensembl Protein Viewer:ENSMUSP00000062277.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050850Re-query CCDS DB by Protein ID:ENSMUSP00000062277
Original member Current member EBI ENSMUST00000107366.1 ENSMUSP00000102989.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107366.1Link to Ensembl Protein Viewer:ENSMUSP00000102989.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107366Re-query CCDS DB by Protein ID:ENSMUSP00000102989
Original member Current member NCBI NM_001161782.1 NP_001155254.1 Accepted alive Link to Nucleotide Sequence:NM_001161782.1Link to Protein Sequence:NP_001155254.1Re-query CCDS DB by Nucleotide ID:NM_001161782Re-query CCDS DB by Protein ID:NP_001155254Link to BLAST:NP_001155254.1
Original member Current member NCBI NM_053084.2 NP_444314.2 Accepted alive Link to Nucleotide Sequence:NM_053084.2Link to Protein Sequence:NP_444314.2Re-query CCDS DB by Nucleotide ID:NM_053084Re-query CCDS DB by Protein ID:NP_444314Link to BLAST:NP_444314.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155254.1 655 Q8CH72 655 100% 0 0
NP_444314.2 655 Q8CH72 655 100% 0 0

Chromosomal Locations for CCDS 18270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 65613208 65615175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGCTGCGGCTGCAGCAGCTTCTCACCTGAACCTGGATGCCCTCCGGGAAGTGCTAGAATGTCCCATCT
GCATGGAGTCCTTCACTGAAGAGCAGCTGCGACCCAAGCTGCTGCACTGTGGCCATACCATCTGCCGCCA
GTGTCTGGAGAAGCTCCTGGCCAGCAGCATCAATGGCGTCCGCTGCCCCTTTTGCAGCAAGATTACTCGC
ATCACCAGCCTGACCCAGCTGACCGACAACCTGACGGTGCTGAAGATCATTGACACAGCTGGGCTCAGTG
AGGCCGTCGGCCTGCTCATGTGCCGAGGCTGTGGCCGGCGGCTGCCTCGGCAGTTCTGCCGAAGCTGTGG
TGTGGTGTTGTGTGAACCCTGCCGGGAGGCAGATCACCAACCCCCTGGCCACTGCACACTTCCGGTCAAG
GAGGCAGCTGAGGAGCGGCGGAGGGACTTCGGGGAGAAGTTGACTCGTCTAAGGGAACTTACTGGAGAGC
TGCAGAGGAGGAAGGCAGCCTTGGAGGGCGTCTCCAGGGATCTTCAGGCAAGGTATAAGGCTGTTCTTCA
AGAATATGGCCATGAGGAACGCCGCATCCAGGAAGAGCTAGCCCGCTCTCGGAAGTTCTTCACAGGCTCC
TTGGCTGAGGTTGAGAAGTCCAACAGTCAAGTGGTAGAGGAGCAGAGCTACCTACTCAACATTGCTGAGG
TGCAGGCCGTGTCTCGCTGTGACTACTTTCTAGCGAAGATCAAGCAAGCTGATGTAGCCCTCCTGGAGGA
GACAGCGGATGAGGAGGAGCCCGAGCTCACTGCCAGCCTACCCCGGGAGCTTACCCTGCAAGATGTGGAG
CTCCTTAAGGTAGGACACGTTGGTCCTCTGCAAATTGGCCAGGCTGTTAAGAAGCCCCGGACAGTTAACA
TGGAAGATTCCTGGGCAGGGGAGGAGGGAGCAGCATCTTCTGCCTCAGCCTCGGTAACCTTTAGAGAGAT
GGACATGAGCCCTGAGGAAGTAGCTCCCAGCCCTAGGGCTTCCCCCGCGAAACAGCGGAGTTCTGAGGCA
GCTTCCGGTATCCAGCAGTGTCTGTTTCTCAAGAAGATGGGGGCGAAAGGCAGCACTCCCGGCATGTTCA
ATCTTCCAGTCAGTCTCTATGTGACCAGTCAGAGTGAGGTGCTGGTTGCCGACCGGGGCAACTATCGTAT
CCAAGTGTTCAACCGCAAAGGCTTTTTGAAGGAGATCCGCCGCAGCCCCAGCGGCATTGATAGCTTCGTG
CTAAGCTTCCTTGGAGCCGACTTGCCCAATCTCACTCCACTTTCAGTGGCCATGAACTGCCATGGGCTGA
TTGGTGTCACTGATAGCTACGACAACTCCCTTAAAGTCTATACCATGGATGGCCACTGTGTGGCCTGTCA
CAGGAGCCAGCTGAGCAAACCATGGGGCATCACAGCCCTACCATCTGGCCAGTTTGTGGTGACTGACGTG
GAAGGCGGGAAGCTCTGGTGTTTCACTGTAGACCGAGGAGCAGGAGTGGTCAAATACAGCTGCCTCTGCA
GTGCTGTGAGGCCCAAGTTTGTCACCTGTGATGCTGAAGGCACAGTCTACTTCACCCAAGGCTTGGGGCT
CAATGTGGAAAACCGACAGAATGAACACCACCTGGAGGGTGGCTTCTCCATCGGTTCTGTTGGCCCCGAT
GGGCAGCTGGGCCGGCAAATCAGCCACTTCTTCTCTGAGAATGAAGATTTCCGCTGCATCGCTGGCATGT
GTGTAGATGCTCGGGGCGACCTCATTGTGGCAGATAGCAGCCGCAAGGAAATTCTCCATTTTCCCAAGGG
CGGTGGCTACAGCGTCCTTATTCGAGAGGGCCTTACCTGTCCAGTGGGCATCGCCCTCACACCCAAGGGG
CAGCTGCTGGTCTTGGACTGTTGGGATCACTGCGTCAAGATCTACAGCTATCATCTGAGAAGATATTCCA
CCCCTTAA

Translation (655 aa):
MAAAAAASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR
ITSLTQLTDNLTVLKIIDTAGLSEAVGLLMCRGCGRRLPRQFCRSCGVVLCEPCREADHQPPGHCTLPVK
EAAEERRRDFGEKLTRLRELTGELQRRKAALEGVSRDLQARYKAVLQEYGHEERRIQEELARSRKFFTGS
LAEVEKSNSQVVEEQSYLLNIAEVQAVSRCDYFLAKIKQADVALLEETADEEEPELTASLPRELTLQDVE
LLKVGHVGPLQIGQAVKKPRTVNMEDSWAGEEGAASSASASVTFREMDMSPEEVAPSPRASPAKQRSSEA
ASGIQQCLFLKKMGAKGSTPGMFNLPVSLYVTSQSEVLVADRGNYRIQVFNRKGFLKEIRRSPSGIDSFV
LSFLGADLPNLTPLSVAMNCHGLIGVTDSYDNSLKVYTMDGHCVACHRSQLSKPWGITALPSGQFVVTDV
EGGKLWCFTVDRGAGVVKYSCLCSAVRPKFVTCDAEGTVYFTQGLGLNVENRQNEHHLEGGFSIGSVGPD
GQLGRQISHFFSENEDFRCIAGMCVDARGDLIVADSSRKEILHFPKGGGYSVLIREGLTCPVGIALTPKG
QLLVLDCWDHCVKIYSYHLRRYSTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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