NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17656.1 Public Mus musculus 3 Fmo5 23 108 98 CCDS HistoryNCBI Gene:14263Re-query CCDS DB by CCDS ID:17656.1Re-query CCDS DB by GeneID:14263See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029729.14 ENSMUSP00000029729.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029729.14Link to Ensembl Protein Viewer:ENSMUSP00000029729.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029729Re-query CCDS DB by Protein ID:ENSMUSP00000029729
Original member Current member EBI ENSMUST00000107049.1 ENSMUSP00000102664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107049.1Link to Ensembl Protein Viewer:ENSMUSP00000102664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107049Re-query CCDS DB by Protein ID:ENSMUSP00000102664
Original member Current member EBI ENSMUST00000107050.7 ENSMUSP00000102665.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107050.7Link to Ensembl Protein Viewer:ENSMUSP00000102665.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107050Re-query CCDS DB by Protein ID:ENSMUSP00000102665
Original member Current member NCBI NM_001161763.1 NP_001155235.1 Accepted alive Link to Nucleotide Sequence:NM_001161763.1Link to Protein Sequence:NP_001155235.1Re-query CCDS DB by Nucleotide ID:NM_001161763Re-query CCDS DB by Protein ID:NP_001155235Link to BLAST:NP_001155235.1
Original member Current member NCBI NM_001161765.1 NP_001155237.1 Accepted alive Link to Nucleotide Sequence:NM_001161765.1Link to Protein Sequence:NP_001155237.1Re-query CCDS DB by Nucleotide ID:NM_001161765Re-query CCDS DB by Protein ID:NP_001155237Link to BLAST:NP_001155237.1
Original member Current member NCBI NM_010232.5 NP_034362.2 Accepted alive Link to Nucleotide Sequence:NM_010232.5Link to Protein Sequence:NP_034362.2Re-query CCDS DB by Nucleotide ID:NM_010232Re-query CCDS DB by Protein ID:NP_034362Link to BLAST:NP_034362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155235.1 533 P97872 533 100% 0 0
NP_001155237.1 533 P97872 533 100% 0 0
NP_034362.2 533 P97872 533 100% 0 0

Chromosomal Locations for CCDS 17656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97629061 97629195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97635511 97635699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97637481 97637643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97638860 97639002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97641668 97641867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97645568 97645920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97650635 97650707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97651482 97651827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCCAAAAAAAGGATTGCTGTAATTGGAGCAGGAGCTAGCGGGCTCACCTGCATCAAGTGCTGCCTGG
AAGAGGGCTTGGAACCTGTCTGCTTTGAAAGGTCTGGTGACATCGGAGGACTGTGGAGATTCCAGGAAGC
CCCTGAGGAAGGCAGGGCCAGTATTTACCAGTCCGTGGTCATCAACACCTCCAAGGAAATGATGTGTTTC
AGTGACTACCCCATCCCAGATCATTACCCTAACTACATGCACAACTCCCAGGTCCTAGAGTATTTCAGGA
TGTATGCCAAAGAATTTGACCTTCTCAAATATATCCAATTCAAGACTACAGTGTGCAGCGTGAAGAAGCA
GCCTGATTTCTCTACCTCGGGCCAATGGCAGGTGGTCACTGAGTGTGAAGGGAAACAGCAGGTAGACGTC
TTCGATGGAGTCCTGGTGTGCACGGGTCATCACACGGATGCTCACCTGCCCCTGGAAAGCTTTCCTGGAA
TTGAAAAGTTCAAAGGAAAGTACTTTCACAGCCGAGACTATAAGAACCCAGTGGAATTCACCGGGAAGAG
GGTCATTGTAATTGGCATTGGGAATTCTGGAGGGGATCTGGCTGTAGAGATTAGCCACACAGCCAAGCAG
GTATTCCTCAGTACCAGGAGAGGAGCTTGGATCTTGAACCGTGTAGGCAAGCATGGATATCCTATTGACC
TGCTACTCTCTTCTCGGATTATGTACTACTTGTCACGTATCTGTGGTCCATCACTAAAAAACAACTATAT
GGAAAAACAGATGAACCAAAGGTTTGATCATGAAATGTTTGGCCTGAAACCTAAACACAGGGCTCTGAGT
CAGCATCCAACAGTGAATGATGACCTGCCCAATCGTATCATTGCTGGCTTGGTGAAGGTGAAAGGAAATG
TGAAGGAATTCACAGAGACAGCCGCCGTATTTGAGGATGGCTCCAGGGAGGATGGCATTGATGTGGTCAT
CTTTGCCACAGGCTACAGCTTTGCCTTTCCTTTTCTTGAGGACTCTGTCAAAGTAGTAAAAAACAAGGTG
TCCTTGTACAAAAAGGTCTTTCCACCTAACCTGGAAAAACCAACACTTGCAATCATCGGCTTAATTCAGC
CCTTGGGAGCCATTATGCCCATTTCAGAGCTCCAAGGACGCTGGGCCACTCAAGTGTTCAAAGGGCTAAA
GAAATTGCCCTCACAAAGTGAAATGATGGCAGAAATAAATAAGGCTCGAGAGGAAATGGCAAAAAGGTAT
GTGGACAGCCAGCGTCATACCATCCAGGGAGACTATATAGACACCATGGAAGAGATTGCAGATTTAGTGG
GTGTCAGGCCCAATATCCTGCCTCTGGTCTTCACTGACCCCAGGCTGGCATTACGGTTACTACTGGGGCC
CTGTACTCCAGTCCAGTATCGCCTACAGGGCCCTGGAAAGTGGGCTGGAGCCCGGAAAACTATTCTCACC
ACGGAAGATCGTGTTCGGAAGCCTCTGATGACAAGAGTGGTGGAAAGAGACAGCTCTGGGGGGTCACTGG
TGACAGTGCGTGTCCTCATGCTGGCTGTTGCTTTCTTTGCTGTCATCCTGGCTTATTTTTAG

Translation (533 aa):
MAKKRIAVIGAGASGLTCIKCCLEEGLEPVCFERSGDIGGLWRFQEAPEEGRASIYQSVVINTSKEMMCF
SDYPIPDHYPNYMHNSQVLEYFRMYAKEFDLLKYIQFKTTVCSVKKQPDFSTSGQWQVVTECEGKQQVDV
FDGVLVCTGHHTDAHLPLESFPGIEKFKGKYFHSRDYKNPVEFTGKRVIVIGIGNSGGDLAVEISHTAKQ
VFLSTRRGAWILNRVGKHGYPIDLLLSSRIMYYLSRICGPSLKNNYMEKQMNQRFDHEMFGLKPKHRALS
QHPTVNDDLPNRIIAGLVKVKGNVKEFTETAAVFEDGSREDGIDVVIFATGYSFAFPFLEDSVKVVKNKV
SLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWATQVFKGLKKLPSQSEMMAEINKAREEMAKRY
VDSQRHTIQGDYIDTMEEIADLVGVRPNILPLVFTDPRLALRLLLGPCTPVQYRLQGPGKWAGARKTILT
TEDRVRKPLMTRVVERDSSGGSLVTVRVLMLAVAFFAVILAYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH