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Report for CCDS21034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21034.1 Public Mus musculus 7 Psmc4 23 108 98 CCDS HistoryNCBI Gene:23996Re-query CCDS DB by CCDS ID:21034.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032824.9 ENSMUSP00000032824.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032824.9Link to Ensembl Protein Viewer:ENSMUSP00000032824.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032824Re-query CCDS DB by Protein ID:ENSMUSP00000032824
Original member Current member NCBI NM_011874.2 NP_036004.2 Accepted alive Link to Nucleotide Sequence:NM_011874.2Link to Protein Sequence:NP_036004.2Re-query CCDS DB by Nucleotide ID:NM_011874Re-query CCDS DB by Protein ID:NP_036004Link to BLAST:NP_036004.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036004.2 418 P54775 418 100% 0 0

Chromosomal Locations for CCDS 21034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28041807 28041920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28042101 28042156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28042339 28042507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28042650 28042726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28042809 28042976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28046986 28047079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28047173 28047282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28047366 28047512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28048793 28048979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28049104 28049202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28049983 28050018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGAGGAGATAGGCATTTTGGTGGAAAAGATTCAGGATGAGATTCCAGCACTGTCCGTGTCTCGGCCGC
AGACCGGCCTGTCCTTTCTGGGACCCGAACCTGAAGACCTGGAGGACCTGTACAGCCGCTACAAGAAGCT
GCAGCAGGAGCTGGAGTTCCTGGAAGTGCAGGAGGAGTATATCAAGGACGAGCAGAAGAACCTGAAGAAG
GAATTCCTCCACGCCCAGGAGGAGGTGAAGCGGATCCAGAGCATCCCCTTGGTCATCGGTCAGTTCTTGG
AAGCTGTGGATCAGAACACAGCCATCGTGGGCTCCACCACAGGCTCTAACTATTATGTGCGCATCCTGAG
TACCATCGACCGGGAGCTGCTCAAGCCCAACGCCTCGGTGGCCCTGCACAAGCACAGCAATGCCCTGGTG
GACGTGCTGCCTCCCGAGGCCGACAGCAGCATCATGATGCTCACCTCAGACCAGAAGCCAGATGTGATGT
ATGCCGATATCGGAGGCATGGACATCCAGAAGCAGGAGGTGAGGGAGGCTGTGGAACTCCCGCTTACACA
CTTCGAGCTGTACAAGCAGATTGGCATCGATCCTCCCCGAGGTGTCCTCATGTATGGCCCTCCTGGCTGT
GGAAAGACAATGTTAGCAAAGGCTGTGGCACATCACACGACAGCTGCATTTATCCGTGTGGTGGGCTCGG
AGTTTGTTCAGAAGTACCTGGGTGAGGGCCCCCGGATGGTCCGGGATGTGTTCCGCCTAGCTAAGGAGAA
TGCACCTGCCATCATCTTCATAGATGAAATTGATGCCATTGCCACCAAGAGATTCGATGCCCAGACAGGA
GCTGACAGGGAGGTTCAGAGGATCCTGCTGGAACTACTGAATCAAATGGATGGATTTGACCAGAACGTCA
ATGTGAAGGTAATCATGGCCACAAACAGAGCAGACACCTTGGATCCAGCTCTACTGCGGCCAGGACGCCT
GGACCGAAAAATTGAATTCCCACTCCCTGACCGTCGCCAGAAGAGGTTGATTTTCTCCACCATCACCAGC
AAAATGAACCTCTCTGAGGAGGTCGACCTGGAAGACTATGTGGCCCGTCCAGATAAGATTTCAGGAGCCG
ATATCAACTCCATCTGTCAGGAGAGTGGAATGTTGGCTGTCCGTGAGAACCGCTACATTGTCCTGGCCAA
GGACTTCGAGAAAGCATACAAGACCGTGATCAAGAAAGATGAACAGGAACATGAATTTTACAAGTGA

Translation (418 aa):
MEEIGILVEKIQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKK
EFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV
DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGC
GKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG
ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITS
KMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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