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Report for CCDS18216.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18216.2 Public Mus musculus 4 Dnajc25 23 108 98 CCDS HistoryNCBI Gene:72429Re-query CCDS DB by CCDS ID:18216.2Re-query CCDS DB by GeneID:72429See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18216.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 119 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18216.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095070.3 ENSMUSP00000092680.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095070.3Link to Ensembl Protein Viewer:ENSMUSP00000092680.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095070Re-query CCDS DB by Protein ID:ENSMUSP00000092680
Original member Current member NCBI NM_001033165.3 NP_001028337.2 Accepted alive Link to Nucleotide Sequence:NM_001033165.3Link to Protein Sequence:NP_001028337.2Re-query CCDS DB by Nucleotide ID:NM_001033165Re-query CCDS DB by Protein ID:NP_001028337Link to BLAST:NP_001028337.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028337.2 357 A2ALW5-1 357 100% 0 0

Chromosomal Locations for CCDS 18216.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 59003231 59003557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59017670 59017822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59020059 59020529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59022561 59022683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCGGCGCGGCTCGCTTTGCGCGGGGGACCCGGGGCTGCCGGCCAGCGCCCATGGCTGCTGCTGGCGC
CGCTGCTGCTGGTCCCGCTGCTGGCGCGGCCCGCCGAGGCCCTGGTGGAAGGGCTGTACTGCGGCACGCG
CGACTGCTACGAGGTGCTGGGCGTGAGCCGCTCGGCCAGCAAGGCGGAGATCGCGCGGGCCTACCGTCAG
CTGGCCCGGCGCTACCACCCAGATCGCTACCGGCCCGAGCCCGGGGACGGCCCCGGGGGCGCGCCGCCGA
GCGCCGAGGCTTTCCTGCTAGTGGCGACCGCCTACGAGACGCTCAAGGATGAAGAAACACGGAAGGATTA
TGACTACATGCTGGATCACCCAGAAGAATACTATAGCCATTACTACCACTACTACAGCAGGCGCCTGGCC
CCAAAAGTGGACGTTAGGGTGGTGATTTTGGTCAGTGTGTGTGCCATTTCAATGTTTCAGTATTTCAGCT
GGTGGAATAGCTACAATAAAGCAATCAGCTACCTAGCCACAGTGCCCAAGTACCGCATCCAGGCAACAGA
AATCGCCAAGGAGCAGGGACTGCTCAAAAAAGCCAAAGAAAAAGGGAAAAACAAGAAGTCCAAAGAAGAA
ATCCGTGATGAGGAGGAGAACATCATAAAGAACATTATAAAAAGTAAAATAGACATAAAGGGGGGCTACC
AGAAACCCCAAGTTCGGGACCTCCTCTTGTTTCAGGTCATCCTCGCCCCTGTTCACCTGTGCTCTTATAT
AGCCTGGTATTGTAGGTGGATCTATAACTTTAACATCAAAGGCAAAGAGTACGGGGAGGAAGAGAGACTT
TACATTATCCGGAAGTCTATGAAGATGTCCCAGTCTCAGTTTGACAGCCTGGAGGACCATCAGAAAGAAA
TGTTTCTCAAGCGGGAGCTTTGGATAAAGGAGAATTATGAGGTCTACAAGCAGGAACAAGAGGAAGAATT
AAAGAAAAAATTGGCAAATGACCCTCGGTGGAAGCGCTACCGCAGGTGGATGAAGAATGAAGGGCCTGGA
CGGCTGACCTTTGTGGACGACTGA

Translation (357 aa):
MAARLALRGGPGAAGQRPWLLLAPLLLVPLLARPAEALVEGLYCGTRDCYEVLGVSRSASKAEIARAYRQ
LARRYHPDRYRPEPGDGPGGAPPSAEAFLLVATAYETLKDEETRKDYDYMLDHPEEYYSHYYHYYSRRLA
PKVDVRVVILVSVCAISMFQYFSWWNSYNKAISYLATVPKYRIQATEIAKEQGLLKKAKEKGKNKKSKEE
IRDEEENIIKNIIKSKIDIKGGYQKPQVRDLLLFQVILAPVHLCSYIAWYCRWIYNFNIKGKEYGEEERL
YIIRKSMKMSQSQFDSLEDHQKEMFLKRELWIKENYEVYKQEQEEELKKKLANDPRWKRYRRWMKNEGPG
RLTFVDD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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