NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19344.1 Public Mus musculus 5 Sgcb 23 108 98 CCDS HistoryNCBI Gene:24051Re-query CCDS DB by CCDS ID:19344.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081170.8 ENSMUSP00000079937.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081170.8Link to Ensembl Protein Viewer:ENSMUSP00000079937.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000081170Re-query CCDS DB by Protein ID:ENSMUSP00000079937
Original member Current member NCBI NM_011890.5 NP_036020.1 Accepted alive Link to Nucleotide Sequence:NM_011890.5Link to Protein Sequence:NP_036020.1Re-query CCDS DB by Nucleotide ID:NM_011890Re-query CCDS DB by Protein ID:NP_036020Link to BLAST:NP_036020.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036020.1 320 P82349 320 100% 0 0

Chromosomal Locations for CCDS 19344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73635495 73635698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73639383 73639514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73639789 73639980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73640683 73640868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73644272 73644481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73647675 73647713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCGGCAGCGGCGGCGGCGGCGGCAGCGACCGAGCAGCAAGGGTCCAACGGGCCAGTGAAGAAATCCA
TGCGGGAGAAGGCTGTGGAGCGGAGGAATGTTAACAAAGAGCACAACAGCAATTTCAAAGCTGGATATAT
CCCCATCGATGAGGACCGGCTCCATAAGACTGGGCTGAGGGGGCGAAAGGGCAACTTAGCCATCTGCGTG
ATCGTCCTCCTGTTTATCCTGGCCGTCATCAATCTACTCATTACACTTGTCATCTGGGCGGTGATCCGCA
TTGGGCCAAATGGGTGTGATAGCATGGAGTTCCACGAGAGCGGTCTGCTGAGGTTCAAGCAAGTGTCTGA
CATGGGCGTCATCCACCCGCTTTATAAGAGCACGGTGGGAGGACGGCGGAATGAAAACCTGGTCATCACT
GGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACCTCCA
TCACCAGCGACATCGGGATGCAGTTTTTTGACCCAAGGACACACAATATCCTGTTCAGCACGGACTATGA
GACGCACGAGTTTCATCTGCCAAGTGGGGTGAAAAGTTTGAACGTTCAGAAAGCATCGACTGAAAGGATT
ACCAGCAATGCTACCAGTGACTTAAACATCAAAGTCGATGGGCGTGCAATTGTGCGAGGCAACGAAGGCG
TCTTCATCATGGGCAAAACCATTGAATTTCACATGGGAGGAGATGTGGAGTTAAAAGCTGAAAACAGCAT
CATCCTCAACGGCACGGTGATGGTCAGCCCTACGCGCCTGCCCAGTTCCTCCAGCGGGGACCAGTCAGGG
AGTGGTGACTGGGTGCGCTACAAGCTCTGCATGTGTGCAGATGGCACACTCTTCAAAGTACAAGTAACAG
GTCACAACATGGGCTGCCAGGTCTCAGACAACCCTTGTGGGAACACTCATTAG

Translation (320 aa):
MAAAAAAAAATEQQGSNGPVKKSMREKAVERRNVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICV
IVLLFILAVINLLITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRRNENLVIT
GNNQPIVFQQGTTKLSVEKNKTSITSDIGMQFFDPRTHNILFSTDYETHEFHLPSGVKSLNVQKASTERI
TSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGDVELKAENSIILNGTVMVSPTRLPSSSSGDQSG
SGDWVRYKLCMCADGTLFKVQVTGHNMGCQVSDNPCGNTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH