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Report for CCDS50398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50398.1 Public Mus musculus 19 Gm4952 23 108 98 CCDS HistoryNCBI Gene:240549Re-query CCDS DB by CCDS ID:50398.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50398.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092931.6 ENSMUSP00000090607.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092931.6Link to Ensembl Protein Viewer:ENSMUSP00000090607.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092931Re-query CCDS DB by Protein ID:ENSMUSP00000090607
Original member Current member NCBI NM_001013762.2 NP_001013784.2 Accepted alive Link to Nucleotide Sequence:NM_001013762.2Link to Protein Sequence:NP_001013784.2Re-query CCDS DB by Nucleotide ID:NM_001013762Re-query CCDS DB by Protein ID:NP_001013784Link to BLAST:NP_001013784.2
Original member Current member NCBI NM_001167907.1 NP_001161379.1 Accepted alive Link to Nucleotide Sequence:NM_001167907.1Link to Protein Sequence:NP_001161379.1Re-query CCDS DB by Nucleotide ID:NM_001167907Re-query CCDS DB by Protein ID:NP_001161379Link to BLAST:NP_001161379.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013784.2 296 Q5FW57 296 100% 0 0
NP_001161379.1 296 Q5FW57 296 100% 0 0

Chromosomal Locations for CCDS 50398.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12613484 12613561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12618326 12618433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12623604 12623730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12624543 12624717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12626714 12627116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGCTCCATTTGCGAAGTTCACAGATGCTGCAGATGTTGGAGAGCTCCTTAAGGAAATACCTTCCTGAGT
CCTTAAAGGTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGA
CAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAGGAGATGGGAGATGACCTTGATCAG
CACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATG
TCATCAACTGGAAACAGCATCTGCAGATCCAAAGTTCACAGTCCAACCTAAATGAAGCAATAATGGACCT
TGCGGCGGGTAAGATGGTCAAGGTCAAGAGAACACAGTGCATTCTCTACATGATGCCTGAGACAGCAAAG
AAACTGGTTCCTTCCCTGTTGGAGGATAAAGAGTACTTAGACCATCAATCTGGCAGGCCCCGGGCTATTG
ACCAAGAAATGTTTAAACTCTCAACACTGGATGTTACCCACGCTCCCTTGGTGGATAAATTCTGGCAGTT
TGGTGGCAATGAAAGGAGCCAGAGATTCATTGGGCGCTGTATCCAGATCTTTCCCAGCTCATGTCTTCTG
GGACCTGAAGGGACTCCTGTGTCTTGGGCTCTGATGGATCAAACTGGAGAAATCCGAATGGCGGGCACAG
TGCCTGACTACCGGGCACAAGGCCTTATCTCCCACATCATTTATGCTCAGACTCTGGCTATGGATAAACG
TGGCTACCCTGTGTATAATCATACAGAACAAACCAACAAAGTCATACAGAAAATGAGTCACACTCTACAC
CATGTCCCCATGCCCTGTGACTGGAATCAGTGGTATTGTGCACCTCTGTGA

Translation (296 aa):
MLHLRSSQMLQMLESSLRKYLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVVRPREQEMGDDLDQ
HTNTYQIYSKDPKHCLEFLGTPDVINWKQHLQIQSSQSNLNEAIMDLAAGKMVKVKRTQCILYMMPETAK
KLVPSLLEDKEYLDHQSGRPRAIDQEMFKLSTLDVTHAPLVDKFWQFGGNERSQRFIGRCIQIFPSSCLL
GPEGTPVSWALMDQTGEIRMAGTVPDYRAQGLISHIIYAQTLAMDKRGYPVYNHTEQTNKVIQKMSHTLH
HVPMPCDWNQWYCAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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