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Report for CCDS21660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21660.1 Public Mus musculus 7 Taf10 23 108 98 CCDS HistoryNCBI Gene:24075Re-query CCDS DB by CCDS ID:21660.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000141116.1 ENSMUSP00000118105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141116.1Link to Ensembl Protein Viewer:ENSMUSP00000118105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141116Re-query CCDS DB by Protein ID:ENSMUSP00000118105
Original member NCBI NM_020024.3 NP_064408.2 Updated not alive Link to Nucleotide Sequence:NM_020024.3Link to Protein Sequence:NP_064408.2Re-query CCDS DB by Nucleotide ID:NM_020024Re-query CCDS DB by Protein ID:NP_064408
Current member NCBI NM_020024.4 NP_064408.2 Accepted alive Link to Nucleotide Sequence:NM_020024.4Link to Protein Sequence:NP_064408.2Re-query CCDS DB by Nucleotide ID:NM_020024Re-query CCDS DB by Protein ID:NP_064408Link to BLAST:NP_064408.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064408.2 218 Q8K0H5 218 100% 0 0

Chromosomal Locations for CCDS 21660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105742974 105743063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105743226 105743340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105743428 105743492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105743830 105743984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105744087 105744318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGAGCTGCAGCGGCTCCGGCGCGGACCCCGAGGCGGCGACCGCCTGTGCCGCCTCGGTCGCGGGTCCGG
CACCCCTGGTGTCGGCTCCCGCTGCGCTGCCCACTAGCACGGCCGCGGAGAGCAAGGCCAGCCCCGCGGG
GACAGCAGGGGGCCCCGTGGCTGGAGTCGCCACTGCGGGCACGGGCCCCGTGGCGGCACGGGCAGGGGAG
CCGGCAGAGCGGCGCGGGCCAGCTTCGGTGGCAGCGGGCGGCGCGGCTCCCCCGGAGGGGGCAATGTCTA
ACGGGGTTTACGCCCTACCGAGCGCGGCCAACGGAGAAGTGAAGCCCGTAGTGTCCAGCACACCTCTAGT
GGACTTCTTGATGCAGTTGGAGGATTACACACCTACGATCCCAGATGCAGTGACTGGTTACTACCTGAAC
CGCGCTGGCTTTGAAGCTTCAGACCCACGCATAATTCGGCTCATCTCACTAGCTGCCCAGAAATTCATCT
CAGATATTGCCAATGATGCCCTACAGCACTGCAAAATGAAGGGCACAGCCTCTGGCAGCTCCCGGAGCAA
GAGCAAGGATCGCAAGTACACCCTAACCATGGAGGACTTGACCCCTGCCCTCAGCGAGTATGGCATCAAT
GTGAAGAAGCCGCACTACTTCACCTGA

Translation (218 aa):
MSCSGSGADPEAATACAASVAGPAPLVSAPAALPTSTAAESKASPAGTAGGPVAGVATAGTGPVAARAGE
PAERRGPASVAAGGAAPPEGAMSNGVYALPSAANGEVKPVVSSTPLVDFLMQLEDYTPTIPDAVTGYYLN
RAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKYTLTMEDLTPALSEYGIN
VKKPHYFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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