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Report for CCDS15516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15516.1 Public Mus musculus 1 Vsig8 23 108 98 CCDS HistoryNCBI Gene:240916Re-query CCDS DB by CCDS ID:15516.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061835.9 ENSMUSP00000058008.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061835.9Link to Ensembl Protein Viewer:ENSMUSP00000058008.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061835Re-query CCDS DB by Protein ID:ENSMUSP00000058008
Original member Current member NCBI NM_177723.4 NP_808391.2 Accepted alive Link to Nucleotide Sequence:NM_177723.4Link to Protein Sequence:NP_808391.2Re-query CCDS DB by Nucleotide ID:NM_177723Re-query CCDS DB by Protein ID:NP_808391Link to BLAST:NP_808391.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808391.2 417 Q6P3A4-1 417 100% 0 0

Chromosomal Locations for CCDS 15516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172556072 172556120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172559608 172559783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172560234 172560435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172560558 172560779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172561496 172561615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172561959 172562157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172563019 172563304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGGAGTTCGAGGAGCACTCCATCTTCTACTTGTGTGCCTGAGCCCAGCACTGTTGTCTGCTGTAAGGA
TCAACGGGGATGGCCAGGAGGTCATGTACCTGGCAGAAGGTGACAATGTGAGGCTAGGCTGTCCCTACCT
CCTGGATCCTGAGGATTTGGGTACCAACAGTCTGGACATTGAGTGGATGCAAGTCAACTCAGAGCCCTCA
CACAGGGAGAATGTTTTTCTTACTTATCAAGACAAGAGGATAGGTCATGGCAACCTCCCCCATCTGCAGC
AGAGGGTCCGCTTTGCAGCCTCAGACCCCAGCCAGTACGATGCCTCCATCAACCTCATGAACCTGCAGGT
ATCTGACACAGCAACCTATGAGTGCCGGGTGAAGAAGACCACCATGGCCACCAGGAAGGTCATTGTCACT
GTCCAAGCACGTCCTGCGGTGCCCATGTGTTGGACGGAAGGCCACATGTCAAAGGGCAACGATGTGGTGC
TGAAGTGCTTTGCCAACGGAGGCTCTCAGCCCCTCTCCTACAAGTGGGCCAAGATCAGTGGGCACAGTCA
CCCCTACCGAGCTGGGGCTTACCACTCACAGCACAGCTTCCACTCTGAGCTTTCTTACCAAGAGTCATTC
CACAGCACCATCAACCAAGGCCTGGGCAACGGAGACCTGCTGTTGAAGGGCATCAACGCAGACGACGATG
GGCTGTATCAGTGCACAGTGGCCAACCATGTGGGCTACAGCGTCTGTGTGGTAGAGGTGAAAGTCTCAGA
CTCCCAGCGAGTAGGCATGATCGTTGGAGCAGTGCTGGGCTCTTTGCTCATGCTGGCCTGCCTGGCACTA
GGCATCTGGGGGCTCATCTGCTGCTGCTGCGGAGGCGGCGGGGCCGGTGGTGCCCGAGGTGCCTTCGGCT
ACGGGGTCGGCGGCGGGGTCGGCGGAGGGGCCTGCGGCGACTTGGCTAGTGAGATCAGAGTGGACGCCGA
GGCGCCCGGGTGTAAGGCCAGCGGGCGCGGCAGCCGCGTCACCCACCTCCTGGGGTACCCGACGCAGAAC
GTCAGCCGCTCCCTGCGCCGCAAGTACGCGCCTCCGCCCTGCGGCGGCCCCGAGGACGTGGCCCTAGTGC
CCCGCACCGCCTCCGCCTCCTGCGAAGCGGGTCCCTCCCCCGTCTACATCAAGGTCAAGAGCGCGGAGCC
GGCCGACTGCGCCGACTGTGCCCAGGTCGAGCAGCGCTCGTGCAAGGACGGCCTCTTAGTGTGA

Translation (417 aa):
MGVRGALHLLLVCLSPALLSAVRINGDGQEVMYLAEGDNVRLGCPYLLDPEDLGTNSLDIEWMQVNSEPS
HRENVFLTYQDKRIGHGNLPHLQQRVRFAASDPSQYDASINLMNLQVSDTATYECRVKKTTMATRKVIVT
VQARPAVPMCWTEGHMSKGNDVVLKCFANGGSQPLSYKWAKISGHSHPYRAGAYHSQHSFHSELSYQESF
HSTINQGLGNGDLLLKGINADDDGLYQCTVANHVGYSVCVVEVKVSDSQRVGMIVGAVLGSLLMLACLAL
GIWGLICCCCGGGGAGGARGAFGYGVGGGVGGGACGDLASEIRVDAEAPGCKASGRGSRVTHLLGYPTQN
VSRSLRRKYAPPPCGGPEDVALVPRTASASCEAGPSPVYIKVKSAEPADCADCAQVEQRSCKDGLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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