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Report for CCDS48260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48260.1 Public Mus musculus 1 Pgap1 23 108 98 CCDS HistoryNCBI Gene:241062Re-query CCDS DB by CCDS ID:48260.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097739.4 ENSMUSP00000095346.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097739.4Link to Ensembl Protein Viewer:ENSMUSP00000095346.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097739Re-query CCDS DB by Protein ID:ENSMUSP00000095346
Original member Current member NCBI NM_001163314.2 NP_001156786.1 Accepted alive Link to Nucleotide Sequence:NM_001163314.2Link to Protein Sequence:NP_001156786.1Re-query CCDS DB by Nucleotide ID:NM_001163314Re-query CCDS DB by Protein ID:NP_001156786Link to BLAST:NP_001156786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156786.1 922 Q3UUQ7-1 922 100% 0 0

Chromosomal Locations for CCDS 48260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54480706 54480844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54481852 54481956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54486470 54486657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54490221 54490271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54492029 54492164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54493209 54493406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54494801 54494891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54497534 54497627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54510028 54510066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54511394 54511502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54511901 54511967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54512597 54512648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54512772 54512845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54514837 54514912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54521292 54521369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54524316 54524367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54525368 54525414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54528512 54528595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54530117 54530172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54530854 54530959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54532022 54532088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54533419 54533471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54535955 54536112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54543038 54543209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54547939 54548114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54550977 54551130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54557434 54557580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGTTTCTCCACTCAGTCAACCTCTGGAATCTGGCGTTCTATGTCTTCATGGTGTTTCTGGCGACCCTGG
GGCTGTGGGATGTCTTCTTCGGCTTCGAGGAAAACAAGTGCAGCATGAGCTACATGTTCGAGTACCCCGA
GTACCAGAAAATAGAGCTCCCAAAGAAACTGACAAAGCGTTATCCAGCATATGAGTTATATCTTTACGGA
GAAGGATCGTACGCTGAAGAACACAAAATTCTCCCTTTGACAGGAATTCCTGTTCTCTTTCTTCCTGGTA
ATGCTGGAAGCTATAAGCAAGTTCGATCTATCGGCTCTATTGCACTTAGGAAAGCAGAAGACATCGACTT
CAAGTACCACTTCGACTTCTTCAGTGTCAACTTCAATGAAGAACTGGTGGCATTGTATGGTGGAAGCCTT
CAGAAGCAGACCAAGTTTGTACACGAGTGCATTAAAGCGATTCTCAAACTCTACAAGGGTCAAGAATTTG
CTCCTACAAGTGTGGCAATAATTGGTCACTCAATGGGTGGCCTTGTTGCCAGAGCATTGCTTACACTGAA
AAATTTTAAGCAAGATCTGATCAATCTTCTTGTTACACAAGCTACTCCTCATGTGGCCCCTGTGATGCCA
TTAGATCGTTTCATTACAGAGTTTTATATGAATGTAAACAACTATTGGATTTTAAATGCTCGGCACATAA
ATTTGACTACACTTTCTGTGGCTGGAGGATTCCGGGATTACCAAGTTCGTTCAGGACTGACTTTTCTACC
AAAATTGAGCCATTACACCAGTGCCTTATCTGTTGTGAGCTCAGCAGTGCCTAAGACCTGGGTCTCAACA
GACCACCTCTCCATCGTGTGGTGTAAACAATTGCAGTTGACTACAATTCGAGCGTTCTTTGATCTTATTG
ATGCCGATACCAAACAAATAACTCAAAAGCCTAAGAAGAAATTGTCCGTTTTGAATCACCATTTTATAAG
ACACCCAGCTAAACAGTTTGAGGAAAATCCGTCCATAATTTCTGACCTAACAGGGACATCTATGTGGGTT
CCAGTAAAAGTGTCCAGATGGTCCTATGTGGCTTATAATGAATCTGATAAGATTTACTTTGCATTTCCTC
TTGCAAATCATAGAAAAATCTACACTCATGCCTATTGTCAGAGCACCATGCTGGATACAAATAGTTGGAT
TTTTGGCTGCATAAACAGCACTTCCATGTGCCGGCAAGGGGTTGATTTGTCATGGAAAGCTGAGCTGTTA
CCAACAATTAAGTCTCTGACGCTAAGACTTCAAGACTATCCATCCTTGTCGCATATTGTTGTCTATGTGC
CATCTGTCCACGGAAGTAAGTTTGTTGTCGACTGTGAATTCTTTAAGAAAGAAGCGAGATCCATGCAGCT
CCCTGTGACTCACCTTTTTTCCTTTGGACTGTCTTCCAGGAAGGTGACGTTAAATACAAACGGCCTATAC
TACAACATAGAGCTGCTGAACTTTGGACAGATATACCAAGCTTTTAAAGTCAACGTGGTCAGCAAGTGCA
CTGGAAGCAAAGAAGAAATAACCAGTATCTATAAACTTCATATCCCCTGGTCCTATGAAGATTCACTAAC
CATCGCACAGGTTCCATCTTCCACAGACATTTCTCTGAAGCTTCATGTTGCTCAGCCAGAAAATGACAGC
CATGTGGCACTGTTAAAAATGTACACGTCGTCAGACTGTCAGTATGAGGTGACAATTAAGACTTCCTTCC
CACAAATACTTGGACAGGTAGTTAGGTTTCATGGTGGAGCCCTTCCTGCCTACGTTGTATCTAGCATCCT
TCTTGCGTATGGAGGACAGTTATACTCACTCCTCTCAACAGGTTATTGCTTAGAATATTCTACCATATTG
GATAAAGAAGCCAAACCATACAAAGTTGACCCATTTGTAATTATGATTAAGTTTTTGTTGGGGTATAAAT
GGTTTAAGGAATTATGGGATGCAGTGTTATTACCGGAATTAGATGCCATCGTTTTGACTAGCCAGAGTAT
GTGTTTCCCTCTTGTATCCTTGATTCTCTTTCTGTTTGGAACATGTACTGCATACTGGAGTGGTCTACTC
TCTTCTACATCTGTGCAGCTTCTTTCTTCATTGTGGCTAGCTCTGAAAAGACCTGCTGAACTTCCTAAAG
ATATCAAGGTGATGTCACCAGACTTGCCTGTTTTGACAGTTGTCTTTCTCATAGTGAGTTGGACAACTTG
TGGAGCACTTGCCATACTTCTGTCTTATCTGTACTATGTGTTTAAGGTTGTTCATCTGCAAGCCAGCCTA
ACTACATTTAAAAATAATCAGCCAGTGAATCCCAAACACTCTAGAAGAAGTGAAAAAAAGTCCAACCACC
ATAAAGACTCTGCTGTACAAAGTCTTCGCTTATGTGCTAATGATGCTGAAGACAGTCTTCGCATGCACAG
CACCGTGATTAACTTGCTGACGTGGGTTGTGCTGCTCAGCATGCCGTCTCTAATCTACTGGTTAAAGAAC
CTTAGGTATTATTTTAAACTTAGTCCTGACCCATGCAAACCCCTGGCATTTCTCCTTATTCCAGCTATAG
CGATTCTCGGAAACACTCACACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGACCGTCTCCCAGTTCCC
ACTTCCTCTGGCTGTTGGCGTGATTGCTTTTGGCTCCTCCCACTTATACAGGGTCCCGTGTTTTGTGATC
ATTCCTCTTGTGTTCCATGCGTTATGCAACTTTATGTAA

Translation (922 aa):
MFLHSVNLWNLAFYVFMVFLATLGLWDVFFGFEENKCSMSYMFEYPEYQKIELPKKLTKRYPAYELYLYG
EGSYAEEHKILPLTGIPVLFLPGNAGSYKQVRSIGSIALRKAEDIDFKYHFDFFSVNFNEELVALYGGSL
QKQTKFVHECIKAILKLYKGQEFAPTSVAIIGHSMGGLVARALLTLKNFKQDLINLLVTQATPHVAPVMP
LDRFITEFYMNVNNYWILNARHINLTTLSVAGGFRDYQVRSGLTFLPKLSHYTSALSVVSSAVPKTWVST
DHLSIVWCKQLQLTTIRAFFDLIDADTKQITQKPKKKLSVLNHHFIRHPAKQFEENPSIISDLTGTSMWV
PVKVSRWSYVAYNESDKIYFAFPLANHRKIYTHAYCQSTMLDTNSWIFGCINSTSMCRQGVDLSWKAELL
PTIKSLTLRLQDYPSLSHIVVYVPSVHGSKFVVDCEFFKKEARSMQLPVTHLFSFGLSSRKVTLNTNGLY
YNIELLNFGQIYQAFKVNVVSKCTGSKEEITSIYKLHIPWSYEDSLTIAQVPSSTDISLKLHVAQPENDS
HVALLKMYTSSDCQYEVTIKTSFPQILGQVVRFHGGALPAYVVSSILLAYGGQLYSLLSTGYCLEYSTIL
DKEAKPYKVDPFVIMIKFLLGYKWFKELWDAVLLPELDAIVLTSQSMCFPLVSLILFLFGTCTAYWSGLL
SSTSVQLLSSLWLALKRPAELPKDIKVMSPDLPVLTVVFLIVSWTTCGALAILLSYLYYVFKVVHLQASL
TTFKNNQPVNPKHSRRSEKKSNHHKDSAVQSLRLCANDAEDSLRMHSTVINLLTWVVLLSMPSLIYWLKN
LRYYFKLSPDPCKPLAFLLIPAIAILGNTHTVSVKSSKLLKTVSQFPLPLAVGVIAFGSSHLYRVPCFVI
IPLVFHALCNFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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