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Report for CCDS15009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15009.1 Public Mus musculus 1 Plekhm3 23 108 98 CCDS HistoryNCBI Gene:241075Re-query CCDS DB by CCDS ID:15009.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097713.1 ENSMUSP00000095320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097713.1Link to Ensembl Protein Viewer:ENSMUSP00000095320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097713Re-query CCDS DB by Protein ID:ENSMUSP00000095320
Original member Current member EBI ENSMUST00000139649.7 ENSMUSP00000138002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139649.7Link to Ensembl Protein Viewer:ENSMUSP00000138002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139649Re-query CCDS DB by Protein ID:ENSMUSP00000138002
Original member NCBI NM_001039493.1 NP_001034582.1 Updated not alive Link to Nucleotide Sequence:NM_001039493.1Link to Protein Sequence:NP_001034582.1Re-query CCDS DB by Nucleotide ID:NM_001039493Re-query CCDS DB by Protein ID:NP_001034582
Current member NCBI NM_001039493.2 NP_001034582.1 Accepted alive Link to Nucleotide Sequence:NM_001039493.2Link to Protein Sequence:NP_001034582.1Re-query CCDS DB by Nucleotide ID:NM_001039493Re-query CCDS DB by Protein ID:NP_001034582Link to BLAST:NP_001034582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034582.1 761 Q8BM47-1 761 100% 0 0

Chromosomal Locations for CCDS 15009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64795037 64795214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64819936 64820093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64861187 64861250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64883129 64883322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64892752 64892897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64921550 64922482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64937697 64938309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGGAAGCTTTGGAAGTAGATGACATCAGCCCCGCCTTAGAGGTTACTGAGGATTTCTTTAGTACTTTTG
ACAGTAAGCTGGAAAAGGCTGTCCAACAAGCAGAGGTTTACGGGATCCAAGAAGTCCCTGAACTGGTGGG
GCATGAGGTACTTGGTAACATAGCAGATAATGGTGCTTTAAGAAGCGTTGCTTCCCTGGGCAAGGGGACA
ATGATTTGGGACCACTGTAAGAGCAGGCTTTTAGAAACCAAAGCTCAAAATGTCTTCCCTGCCAAAGAAC
AGCTTATGGTCCAGAGAGGGACAGCCCCAGATAATCTTTCCTGGATGGCACAAAAGGAAGCGTCAACCTT
CAATTTTTTCAACATCTGTCAGCGTCGGAGGGACAGACCTCGTTCTGTGAATGACTTATTGGATGAGACC
ACAACTTTCAAGCCAGGCCATGCTCGGTCAAGGTCCGATGTTACCCACGTAGACTGGCGGGTAGTCCTTA
GCACCATGCCTTTGCAGCAGCAGCAGCAGCAGCAGCAGGCGTCCCTTCAAGGCATTCACTTTCCCGGGCC
ATCTTTTCTGTTGTCTTCACCCAGCAAGGTTGAAGATGCTCAAGGAAATACAGAACACAAGCAGACATTC
CCAAACATCCTGAAGAAGGGTTATCTGGAGATCAGGAAGAACCATGACAGTTACTGGCAGAGCTGTTATG
CAGAACTCTCACCCTACAACTTAAACTTCTACAGCCTTGATAGCAGTGGCAATCAAAACCTGTATGCCAC
ATACCAGCTTTCCCACTTCCAGAGCATCTCTGTTTTAGGCAATCTTGAAGCTAGGATGGTAGACACTGTT
CTCTATGACAATTCTCAACTGCAGCTAAAGGCAGAGTCTCCATGGGAGGCATTGGACTGGGGGCAGAAGC
TCTGGGAAGTCGTGCATGCTGCTGTACCCAATTACATGGGACGGCAGGGTGAGATGGCAAACTCTCCAGG
ACTCATCCATCATGGTGACTGTGCACAGAACCACTGTTTACAGAAGAAATCCAGTGGGCTGCTGGCCTCC
CCTGTCTTGGATAGCCCCAAACAGTACCAAAATATCCTCAAATCAGGGACACTCTACAGACTGACTGTCC
AAAACAACTGGAAGGCCTTTACATTTGTGCTGAGCAAGGCCTATCTTATGGCTTTCCACCCCGGCAAGCT
AGACGAAGATCCCCTGTTGAGCTACAATGTGGATGTGTGTCTGGCTGTGCAGATAGACAACCTGGATGGT
TGTGACTCTTGCTTTCAAGTCATTTTTCCCCAGGATGTCCTCCGCCTCCGGGCTGAGACCCGACAGAGGG
CTCAGGAATGGATGGAGGCTCTGAAGACAGCAGCCAACGCTGCAAGGAGTTCTGAGCAAAACCTGCAAGT
CACACTGCGGAACAAGCCCAAGGATCAGCTAGATGGCCGCGAGCTGCGGAAGAACAAACGCCAGTCTGTG
ACCACCAGCTTCCTGAGCATCCTGACCACGCTGTCTTTGGAGCGAGGACTCACTGCTCAGAGTTTCAAAT
GTGCAGGGTGCCAGCGATCTATTGGTCTCTCTAACGGAAAGGCCAAGGTGTGCAATTATAGCGGGTGGTA
CTACTGCAGCAGCTGCCATGTGGACGACAGCTTTCTCATCCCAGCACGCATAGTTCACAACTGGGACACC
TCAAAATACAAGGTATCCAAGCAGGCCAAGGAGTTTCTGGAGTATGTGTACGAAGAACCTCTGATCGACA
TCCAGCAGGAGAACCCCATGCTGTACCTCCATGCTGAGCCACTGGCCACCGTTGTACGGCTTCGACAGCG
GTTGAAGTCACTCCGGGCCTATTTGTTCAGCTGCCGGGCAGCAGTGGCGGAGGATCTGCGCCGCAGAATT
TTCCCCAGAGAATATCTCCTTCAACAGATCCACCTGTACTCTCTCGCTGACCTGCAGCAGGTGATAGAGG
GAAAGCTGGCTCCATTCTTGGGAAAGGTCATTAAATTCGCCACCGCGCATGTCTACAGCTGCAGTCTCTG
TAGCCAGAAAGGGTTCATCTGTGAGATCTGTAACAACGGCGAGATCCTCTACCCCTTCGAGGACATTTCA
ACAAGCAGATGTGAAAGCTGTGGAGCTGTCTTCCATTCTGAGTGCAAAGAAAAGTCTGTCCCCTGCCCAC
GGTGTGTCCGACGGGAACTGCAGAAGAAGCAGAAGTCCTTCTGGCGGCAGCTGAACGTGGACGAGAGCCT
GGAGGAGGCATGCGCCATGTTCGAGCTGTCCTACCAAAGCACCTGA

Translation (761 aa):
MEALEVDDISPALEVTEDFFSTFDSKLEKAVQQAEVYGIQEVPELVGHEVLGNIADNGALRSVASLGKGT
MIWDHCKSRLLETKAQNVFPAKEQLMVQRGTAPDNLSWMAQKEASTFNFFNICQRRRDRPRSVNDLLDET
TTFKPGHARSRSDVTHVDWRVVLSTMPLQQQQQQQQASLQGIHFPGPSFLLSSPSKVEDAQGNTEHKQTF
PNILKKGYLEIRKNHDSYWQSCYAELSPYNLNFYSLDSSGNQNLYATYQLSHFQSISVLGNLEARMVDTV
LYDNSQLQLKAESPWEALDWGQKLWEVVHAAVPNYMGRQGEMANSPGLIHHGDCAQNHCLQKKSSGLLAS
PVLDSPKQYQNILKSGTLYRLTVQNNWKAFTFVLSKAYLMAFHPGKLDEDPLLSYNVDVCLAVQIDNLDG
CDSCFQVIFPQDVLRLRAETRQRAQEWMEALKTAANAARSSEQNLQVTLRNKPKDQLDGRELRKNKRQSV
TTSFLSILTTLSLERGLTAQSFKCAGCQRSIGLSNGKAKVCNYSGWYYCSSCHVDDSFLIPARIVHNWDT
SKYKVSKQAKEFLEYVYEEPLIDIQQENPMLYLHAEPLATVVRLRQRLKSLRAYLFSCRAAVAEDLRRRI
FPREYLLQQIHLYSLADLQQVIEGKLAPFLGKVIKFATAHVYSCSLCSQKGFICEICNNGEILYPFEDIS
TSRCESCGAVFHSECKEKSVPCPRCVRRELQKKQKSFWRQLNVDESLEEACAMFELSYQST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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